Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq320 82.4 2e-11 >seq320 Length=46213 Score = 82.4 bits (90), Expect = 2e-11 Identities = 121/169 (72%), Gaps = 3/169 (2%) Strand=Plus/Minus Query 39887 CCTGAGAACTGGGCCGCCTGAAGCTGGAGTTTTCCGCTAAGTTTCCCTGGCTGGGAGAGG 39946 ||||| |||||| || | | |||||| |||||| | | |||| | ||||||| Sbjct 12496 CCTGAAAACTGGACCATTTAACGCTGGAATTTTCCAATTATGATCCC-GTTTGGGAGA-- 12440 Query 39947 AGCGGAATCGCATGAAGGCATCGAAGTTCACAGAGGCGCAGAAGGCGTTCATCCTGAAGC 40006 || |||| ||||| | |||||||| ||||| ||||| | || ||||| |||||| Sbjct 12439 AGGAGAATTTCATGAGGAAGTCGAAGTTTACAGAAGCGCAAATTGCATTCATTTTGAAGC 12380 Query 40007 AGGGCGAGGAAGGCACGCCGGTCGCAAAGATCTGCCGCAAGGCCGGGAT 40055 ||| || ||||| ||| | || || | ||||||||||||| || || Sbjct 12379 AGGCTGATGAAGGTACGGCTGTTGCTGAAGTCTGCCGCAAGGCTGGCAT 12331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128615884803918