Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq492 113 8e-20 seq557 98.7 2e-15 >seq492 Length=1085467 Score = 113 bits (124), Expect = 8e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||||||||||||||| |||||| ||| || ||||| || || | | | Sbjct 147382 CGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCA 147441 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || ||||| | | ||| || || ||||| ||||| || || Sbjct 147442 TCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTG 147501 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || || || | || ||| ||||| || ||||||||||| || |||||| Sbjct 147502 TCCTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTATA 147561 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || ||||| || ||||| Sbjct 147562 GTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| |||| |||| ||||| |||||| || || |||||| || || | | | Sbjct 147154 CGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCA 147213 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || || ||||| | | ||| || || ||||| ||||| || || Sbjct 147214 TCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTG 147273 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||| || || | ||| || ||||| || ||||||||||| || || || Sbjct 147274 TCCTGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATC 147333 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || | || || ||||| || ||||| Sbjct 147334 GTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||| | || | |||||||||||||||| |||||| ||| || ||||| Sbjct 147823 ATACCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCA 147882 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || | || || | || || || || ||||| | | ||| ||||| ||| Sbjct 147883 CTCAAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGA 147942 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || || || || | ||| || || || || |||||| Sbjct 147943 GGAATACCCTCCTTGTCCTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCA 148002 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || ||||| | || || ||||| || ||||| Sbjct 148003 ACTTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || || |||||||||||||||| |||||| || || ||||| Sbjct 147595 ATACCACCCCGAAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCA 147654 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || | || || | || || || || || || | | ||| || || ||| Sbjct 147655 CTCAAGGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGA 147714 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || || || || || | || ||| ||||| || |||||| Sbjct 147715 GGAATTCCCTCCTTGTCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCA 147774 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| || || | || || ||||| || ||||| Sbjct 147775 ACTTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 >seq557 Length=252103 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||| |||||||| |||| |||||| ||||| ||||| || |||| ||| || Sbjct 156316 TACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCATCCTC 156257 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 | || || || || ||||| || | ||| || || ||||| || || || ||||| || Sbjct 156256 AAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTATCCTG 156197 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAG-AGTTATAGTTT 193329 || ||||| || | |||| | | ||||| || ||||||||||| || || ||||| | Sbjct 156196 GATCTTGGTCTTCACATTTTCA-TCGTATCCGATGACTCAACTTCAAGCGGTAATAGTCT 156138 Query 193330 TACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || | ||| || || || || ||||| Sbjct 156137 TTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | || | |||||| ||| || ||||| || || | | Sbjct 155865 CGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCG 155806 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| ||||| | | ||| ||||| ||||| || || || || Sbjct 155805 TCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTG 155746 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || || || | ||| ||| ||||| || ||||||||||| || || ||| Sbjct 155745 TCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATA 155686 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | ||| || ||||| || ||||| Sbjct 155685 GTCTTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || ||||| || | || | |||||| ||| || ||||| || || | | Sbjct 155637 CGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCG 155578 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| ||||| | | ||| ||||| ||||| || || || || Sbjct 155577 TCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTG 155518 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || || || | ||| ||| ||||| || ||||||||||| ||||| ||| Sbjct 155517 TCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATA 155458 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || | || || || || || ||||| Sbjct 155457 GTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899641771101360