Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_021305.1 Length=76179 Score E Sequences producing significant alignments: (Bits) Value seq160 205 5e-48 >seq160 Length=568654 Score = 205 bits (226), Expect = 5e-48 Identities = 464/692 (67%), Gaps = 7/692 (1%) Strand=Plus/Minus Query 65736 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 65795 ||| ||||||| ||||||| ||| |||| ||| || || |||| ||| ||| |||| Sbjct 244256 ATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGGGGA 244197 Query 65796 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 65855 || || || || ||||| ||||||||||| || || | || ||| ||||||||| Sbjct 244196 CGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCACGCG 244137 Query 65856 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 65915 || || | ||||| ||| ||| || | |||||| | | |||||||||| ||| | || Sbjct 244136 GTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCTCTC 244077 Query 65916 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 65975 || | |||||| | |||||| || | ||| | ||| || | |||||| Sbjct 244076 GATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAGCCG 244017 Query 65976 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66035 || || || ||||| || || || |||| || | | || || || | | Sbjct 244016 GATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATCGAT 243957 Query 66036 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66095 || | || ||||| || ||||| || || |||||| | || ||| ||||||| || || Sbjct 243956 ATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAAATG 243897 Query 66096 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACT 66155 || ||| ||||||||| |||| || || | ||| || || | || || | || Sbjct 243896 GGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTAACG 243837 Query 66156 GGCACCATCTCCAGCACCAACACGCTG-ACGCTCTGGGTCAACCAGTTGCGCGAGAAGAT 66214 || | || | | | | || ||| | ||| |||||||| | || |||||| Sbjct 243836 GGTATTATTGCGAAGAGCCGGAC-CTGTGTGGTCTTTATCAACCAGATCCGATTGAAGAT 243778 Query 66215 CGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGGTTCTA 66274 ||| |||| | |||| ||| || || ||||| ||||| || | | ||| || Sbjct 243777 CGG---CGTGATGTTCGGCAGCCCCGAAACGACTACGGGTGGCAACGCACTTAAGTTTTA 243721 Query 66275 CGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAGGCTG 66333 ||| | || ||||| | ||||| |||| | ||| ||||| ||||| ||| | Sbjct 243720 TAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAGCGATAAGGTCG 243662 Query 66334 TCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGCAACG 66393 | || || || |||||||| ||||| |||||||||||| ||||||||||| |||| | Sbjct 243661 TGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCCGTTCCGCGAGC 243602 Query 66394 CCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66425 |||||| || ||||||| || |||||| Sbjct 243601 ATGAGTTCGATATCATGTACGGCGAAGGCATC 243570 Score = 93.3 bits (102), Expect = 2e-14 Identities = 140/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 65970 CAGCCGGA-CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66028 |||||||| ||| ||||||||||| ||||| || || || |||| ||| || || || Sbjct 395860 CAGCCGGATCAC-GGCGAGCAGGCTCTGGAAATTGTCGAGATCCTGGTCCGATCGGG-GA 395803 Query 66029 GCTGTCCATCGTCGTCGTT---GACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 66085 | || || ||| ||||| || || ||||| ||| ||||||| || ||||||||||| Sbjct 395802 -CAATCGAT-GTCCTCGTTCTGGATTCAGTGGCTGCCTTGGTGCCCCGTGCCGAGCTCGA 395745 Query 66086 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 66145 ||| || || || || ||| | || |||| || || || ||| || |||||||| Sbjct 395744 AGGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGTCTTATGAGCCAAGCCATGCG 395685 Query 66146 CAAGCTCACTGG 66157 || ||||| || Sbjct 395684 AAAACTCACCGG 395673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243644665296420