Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq281 95.1 4e-15 >seq281 Length=42506 Score = 95.1 bits (104), Expect = 4e-15 Identities = 235/349 (67%), Gaps = 12/349 (3%) Strand=Plus/Plus Query 31460 TCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGCGATCA 31519 || |||||||||||||| | || |||| | || ||| ||||| || | || ||||| Sbjct 13069 TCAAGCATGGTCAGCGTGCCGTTATAGCCTTGCAGCACAACTTCCGTGGAATAACGATCC 13128 Query 31520 CCACC-GTCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTCGA 31578 |||| | | || | |||||| || ||||| || | || ||| ||||| |||||||| | Sbjct 13129 GCACCGGACTGA-TCCTGCCATTTTCGGGTCTGTAACTGGCCTTCGATATAAACCTT-GG 13186 Query 31579 TCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACGCT 31638 |||| || || | ||| |||||| ||| || || | || | || || | Sbjct 13187 CGCCTTGCGCAAATAATTTCCGC-CACCTTGCAGAGGCCCTCTGAAAAAATCACCACCCG 13245 Query 31639 ATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAAGT 31698 ||||| ||||| || ||| ||||| ||| ||||||||| |||||| || Sbjct 13246 GTGCCATTCGGTCTTGTCGCGGCGTTCGCCTGTGTTTTTGTCGCGCCAACTTTCGCTTGT 13305 Query 31699 CGCAAGGCGAAGGCTGGCGAT---GCTACC-CCCGGCTTGTGTCTTTCGGATTTCCGGAT 31754 |||| | ||| | || || || || || || || | || ||||||||||| Sbjct 13306 GGCAATACTGAGGTTTGCAATCGGCCTGCCATCCTGCGTGCGCCT----GATTTCCGGAT 13361 Query 31755 CGGCGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 | || || |||| || | | ||| ||||| || |||||||| ||||| Sbjct 13362 CAGCCCCCAGATTACCCACTAAAATCACTTTATTCACGCTACCAGCCAT 13410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169802535546864