Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq475 147 2e-30 seq99 127 2e-24 seq492 107 2e-18 seq557 104 2e-17 seq864 86.0 6e-12 seq932 82.4 7e-11 >seq475 Length=1546706 Score = 147 bits (162), Expect = 2e-30 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || |||||||| || || || || || || |||||| | Sbjct 934623 ACCATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCG 934564 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||| || | || || || ||||||||||||||| || || || |||| || Sbjct 934563 TCGGACAACGTTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGAC 934504 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA--GAAACATGTCAGATT 24878 ||||| ||| |||| |||||||| || || ||||||| ||| ||| | |||| |||| Sbjct 934503 CAACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGA--CGACCGAACCTTGTCGGATT 934446 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||| |||||||| || || || || |||||| | || |||||||||| Sbjct 934445 ATAACATCCAAAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 934394 >seq99 Length=379092 Score = 127 bits (140), Expect = 2e-24 Identities = 170/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||| || | || || |||||||| || || || || || || |||||| | Sbjct 174085 ACCATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCA 174026 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||| | | || || || ||||||||||||||| || || || |||| || Sbjct 174025 TCGGACAACATTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGAC 173966 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGA--GAAACATGTCAGATT 24878 ||||| ||| |||| |||||||| || || ||||||| ||| ||| | |||| |||| Sbjct 173965 CAACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGA--CGACCGAACCTTGTC-GATT 173909 Query 24879 ATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 | |||| || |||||| || || || || |||||| | || |||||||||| Sbjct 173908 ACAACA-TCCAAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 173858 >seq492 Length=1085467 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || || || || |||||||| ||||| || || | Sbjct 148052 ATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCG 147993 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || || | ||| || || ||| || ||||| || || || ||||||||||| Sbjct 147992 GACACAATCGAGAATGTTAAGACGAA-GATTCAGGACAAGGAGGGTATTCCTCCCGATCA 147934 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| |||| || || ||||| ||||| ||||| | | || || || || Sbjct 147933 GCAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAA 147874 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||| || || || ||| | || |||||||||| Sbjct 147873 CATTCAGAAAGAGTCTACATTGCATCTGGTGTTGCG 147838 Score = 102 bits (112), Expect = 7e-17 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || ||||| || || || | Sbjct 148280 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148221 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || ||| ||||| ||||| ||||| || || || || || Sbjct 148220 GACACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148162 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTA 24879 || ||| | ||||| || || || ||||| ||||| || || || || || || Sbjct 148161 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGA--CG-GACGCACGTTGAGTGACTA 148105 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 |||||||| ||||| || || || ||| |||| | || | || |||||| Sbjct 148104 CAACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGC 148053 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || ||||| || || || | Sbjct 148508 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148449 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || ||| ||||| ||||| ||||| || || || || || Sbjct 148448 GACACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148390 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTA 24879 || ||| | ||||| || || || ||||| ||||| || || || || || || Sbjct 148389 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGA--CG-GACGCACGTTGAGTGACTA 148333 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || || ||| |||| Sbjct 148332 CAACATTCAGAAGGAGTCCACCCTTCACCTGGT 148300 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || ||||| || || || | Sbjct 148736 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCG 148677 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || ||| ||||| ||||| ||||| || || || || || Sbjct 148676 GACACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148618 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTA 24879 || ||| | ||||| || || || ||||| ||||| || || || || || || Sbjct 148617 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGA--CG-GACGCACGTTGAGTGACTA 148561 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || || ||| |||| Sbjct 148560 CAACATTCAGAAGGAGTCCACCCTTCACCTGGT 148528 >seq557 Length=252103 Score = 104 bits (114), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || ||||| || || || | Sbjct 154744 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCA 154803 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| || || ||| ||||| ||||| ||||| || | ||||| || Sbjct 154804 GACACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCAT--CCCCCGACCA 154860 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| || || || ||||| ||||| | | | || || || || Sbjct 154861 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACCTTGAGTGACTACAA 154920 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||| ||||| || || || |||||||| Sbjct 154921 CATTCAGAAGGAGTCCACCCTTCACTTGGT 154950 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || ||| | || || || ||||||||||| ||||| || | | Sbjct 155651 ATGCAGATTTTTGTGAAGACGTTGACTGGAAAGACTATTACGCTTGAAGTTGAGTCATCG 155710 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || ||||||||||| Sbjct 155711 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155770 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || ||||| || ||||| ||||| | | || || || ||| Sbjct 155771 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155830 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || || || || || ||| |||| | || | || |||||| Sbjct 155831 ATTCAGAAAGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGC 155878 Score = 100 bits (110), Expect = 3e-16 Identities = 159/227 (70%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||| ||| | || || || ||||||||||| ||||| || | | Sbjct 156334 ATGCAGATTTTCGTTAAGACGTTGACTGG-AAGACTATTACGCTTGAAGTTGAGTCATCG 156392 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| || || || || ||||| || Sbjct 156393 GACACGATTGAAAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 156452 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || || || || ||||| |||||| | | || ||||| ||| Sbjct 156453 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACTTTGAGCGATTACAAC 156512 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || | ||| | || ||||||| || Sbjct 156513 ATCCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGTCTGCGCGGCGG 156559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || || | || || || |||||||| || ||||| || | | Sbjct 155423 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATTACTCTTGAAGTTGAGTCATCG 155482 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || || || ||||||||||| Sbjct 155483 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155542 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||| || ||||| || ||||| ||||| | | || || || ||| Sbjct 155543 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155602 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || || || || || ||| |||| | || | || |||||| Sbjct 155603 ATTCAGAAAGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGC 155650 >seq864 Length=1598700 Score = 86.0 bits (94), Expect = 6e-12 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||||||||||| ||| ||||| | |||||||| || || || ||||| | || Sbjct 469113 ACAAATTTGTTGAGTGCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGTG 469172 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 ||||| | ||| || | ||||||||| || || ||||| | || || || ||| Sbjct 469173 TATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTTG 469232 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 || || | |||||| | ||| || || ||||| || || || || || || | || | | Sbjct 469233 CTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGCC 469292 Query 139243 TCTATAAT 139250 || | ||| Sbjct 469293 TCCAAAAT 469300 >seq932 Length=795108 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 139063 ACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTG 139122 ||||||||||||| ||| ||||| | |||||||| || || || ||||| | || Sbjct 206636 ACAAATTTGTTGAGTGCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGTG 206577 Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 ||||| | ||| || | ||||||||| || || ||||| | || || || ||| Sbjct 206576 TATTCAATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTTG 206517 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTC 139242 || || | |||||| | ||| || || ||||| || || || || || || | || | | Sbjct 206516 CTCTTCCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGCC 206457 Query 139243 TCTATAAT 139250 || | ||| Sbjct 206456 TCCAAAAT 206449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449891284562440