Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq160 168 3e-37 seq263 104 1e-17 >seq160 Length=568654 Score = 168 bits (186), Expect = 3e-37 Identities = 482/736 (65%), Gaps = 29/736 (4%) Strand=Plus/Minus Query 67565 ACCATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGG 67624 || ||| ||||||| || || | ||| |||| ||| || || |||| ||| || || Sbjct 244259 ACGATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGG 244200 Query 67625 GGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCAC 67684 || || || || |||||||| || || || || || || | || || |||||| Sbjct 244199 GGACGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCAC 244140 Query 67685 GCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCT 67744 ||||| || | || || ||| ||| || | |||||| | | ||||||| ||||| || Sbjct 244139 GCGGTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCT 244080 Query 67745 CTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAG 67804 ||||| | |||||| | ||||||||| ||| ||||| || | |||| Sbjct 244079 CTCGATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAG 244020 Query 67805 CCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTT 67864 || || || || ||||| || || || |||| || | | || || || | | Sbjct 244019 CCGGATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATC 243960 Query 67865 TCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGAC 67924 || | || || || || ||||| || || |||||| | || ||| |||||||||| Sbjct 243959 GATATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAA 243900 Query 67925 ATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTG 67984 || || ||||| ||||||||| |||| || || ||||| || || | || || | Sbjct 243899 ATGGGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTA 243840 Query 67985 ACCGGCACGATTGCCAGCACCAACACGCTCACCCTGTGG-----GTGAATCAGCTGCGCG 68039 || || | ||||| | | | || | ||||| | || ||| | || Sbjct 243839 ACGGGTATTATTGCGAAGAGCCGGAC-----CTGTGTGGTCTTTATCAACCAGATCCGAT 243785 Query 68040 AGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACCGGTGGTAAGGCT 68095 ||||||||| |||| | ||| |||||| || || || ||||| || || Sbjct 243784 TGAAGATCGG---CGTGATGTTCGGCAGCCCCGAA----ACGACTACGGGTGGCAACGCA 243732 Query 68096 CTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGA-GAAGGAAGG 68154 || || || |||| | |||||||| | || | |||| | ||| ||||| | Sbjct 243731 CTTAAGTTTTATAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAG 243673 Query 68155 CGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCC 68214 |||| ||| || || || || || || || ||||| |||||||||||| |||| || || Sbjct 243672 CGATAAGGTCGTGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCC 243613 Query 68215 GCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAG---GCCGA 68271 | |||| || |||||| ||| | |||||||| ||||| | || || | ||| Sbjct 243612 GTTCCGCGAGCATGAGTTCGATATCATGTACGGCGAAGGCAT---CAGCAAGACCGGCGA 243556 Query 68272 ACTCCTCGACATGGCC 68287 || ||||| |||||| Sbjct 243555 TCTTCTCGATATGGCC 243540 Score = 109 bits (120), Expect = 3e-19 Identities = 191/272 (70%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 67721 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 67780 |||| |||||||| |||||| |||||||| | | |||||||| || || || Sbjct 395941 GCCTTTATCGACGCAGAACATGCTCTCGACGTTCATTACGCCGCCAACCTGGGAGTACGG 395882 Query 67781 GTCGACAATCTCGTGGTTGTGCAGCCAGA-CACTGGCGAGCAGGCCCTGGAGATCGTTGA 67839 | || | ||| || || |||||| || ||| ||||||||||| ||||| || || || Sbjct 395881 GCTGAGCAACTCCTGATTTCGCAGCCGGATCAC-GGCGAGCAGGCTCTGGAAATTGTCGA 395823 Query 67840 CCTTCTCGTCAAGTCTGGCGAGGTTTCCAT--CATCGTTGTGGACTCTGTGGCGGCCCTG 67897 | || ||| || || || | | || | ||||| |||| || ||||| ||| || Sbjct 395822 GATCCTGGTCCGATCGGG-GACAAT-CGATGTCCTCGTTCTGGATTCAGTGGCTGCCTTG 395765 Query 67898 GTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGC 67957 ||||| || || ||||||||||| || || || || | || | || |||| ||||| Sbjct 395764 GTGCCCCGTGCCGAGCTCGAAGGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGT 395705 Query 67958 CTGATGTCTCAGGCCATGCGCAAGCTGACCGG 67989 || ||| || |||||||| || || ||||| Sbjct 395704 CTTATGAGCCAAGCCATGCGAAAACTCACCGG 395673 >seq263 Length=70425 Score = 104 bits (114), Expect = 1e-17 Identities = 426/666 (64%), Gaps = 17/666 (3%) Strand=Plus/Plus Query 67601 CTCGGCATCGGGGGGTATCCGAGGGGCCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCA 67660 ||||| || ||||| |||| |||||||| | ||||| || || || || ||| Sbjct 64609 CTCGGAATTGGGGGTCTGCCGAAAGGCCGGGTGATTGAGATTTATGGACCAGAAAGTTCT 64668 Query 67661 GGGAAGTCAACGTTGTGCCTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCC 67720 || || ||||| | | | || | || || | || ||||| ||| ||| Sbjct 64669 GGTAAAACAACGCTATCATTACATGTCGTTGCTGAAGCGCAGAAAAGCGGAGGCGTTTGT 64728 Query 67721 GCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGAT 67780 || | | || ||||| ||| | || || || | || ||||| |||||| || ||| Sbjct 64729 GCGTTTGTAGATGCCGAGCATGCACTTGATCCGGCCTATGCCGCCAAGCTCGGCGTTGAT 64788 Query 67781 GTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGAC 67840 | || || | || | | || ||||| || |||||||| || |||||||| | ||| Sbjct 64789 TTAGATGATTTTGTTGATTCACAACCAGATACAGGCGAGCAAGCGCTGGAGATTGCAGAC 64848 Query 67841 CTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGT-TGTGGACTCTGTGGCGGCCCTGGT 67899 | ||| ||||| | || | | | || |||||| || ||||| || ||| Sbjct 64849 ACATTGGTCCGCTCTGGTGCTGTGGACGTTCTGGTGTGTGGATTCGGTGGCAGCGCTGAC 64908 Query 67900 GCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCT 67959 |||||| || || || ||||| || || || ||| | ||||| || || || | Sbjct 64909 GCCGCGAGCAGAACTTGAAGGTGATATGGGCGACAGTCTTCCAGGCCTTCAGGCGCGTTT 64968 Query 67960 GATGTCTCAGGCCATGCGCAAGCTGACCGGCACGATTGCCAGCACCAA---CACGCTCAC 68016 |||| |||||| |||||||||||||||| |||| | | | || || | ||| Sbjct 64969 GATGAGCCAGGCCTTGCGCAAGCTGACCGGGTCGATCTCGAAATCAAATTGCATGGTCA- 65027 Query 68017 CCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCAACGTGGGCTACGGC---CCGAATGA 68073 | | | || ||| | || |||||| || ||| | ||| ||| || Sbjct 65028 --TTTTCATCAACCAGATCCGGATGAAGATTGG---GGTGATGTTTGGCAGTCCG---GA 65079 Query 68074 GACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAG 68133 || || || || || || || ||| |||||| |||| ||||| | ||| | ||| | Sbjct 65080 AACAACAACAGGGGGAAATGCGCTGAAATTCTACTCCTCTGTGCGCCTCGATATTCGCCG 65139 Query 68134 GATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGT 68193 |||| | || ||||| | ||||||| | |||| | | || || || || | || Sbjct 65140 TATCGGCGCCATCAAGGATCGTGATGAGGTCATTGGCATCAG-ACCCGTGTTAAAATCGT 65198 Query 68194 CAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGG 68253 || ||||| | || || ||| ||| || |||||| |||| | || ||||| || Sbjct 65199 GAAAAACAAAGTCGCACCACCGTTTCGCGTGGTCGAGTTTGACATCATTTATGGCGAAGG 65258 Query 68254 CATTTC 68259 |||||| Sbjct 65259 CATTTC 65264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247446213265584