Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq546 123 4e-22 seq652 114 2e-19 seq864 100 5e-15 seq932 93.3 7e-13 >seq546 Length=1814899 Score = 123 bits (136), Expect = 4e-22 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| ||||| || ||||| || ||||| ||| |||| || || ||| | | Sbjct 1455196 TGTACTTGGTGACTGCCTTAGTTCCCTCAGACACGGCATGCTTGGCGAGCTCTCCGGGAA 1455137 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| || |||||||| || ||||| | | | ||| || ||||| || Sbjct 1455136 GCAAAAGGCGAACTGCGGTCTGAATTTCGCGTGAGGTCAACGTCTTTGTATTGTT-GTAA 1455078 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || | ||||||| | | | ||||| |||| || || |||||| |||||| Sbjct 1455077 GAAGCAAGCTTGGCGGCCTCTGAGGCAATGCGTTCGAACAAATCACCGACAAATGAGTTC 1455018 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | |||| ||||| || ||| || ||||| ||||||||||||||| Sbjct 1455017 ATGATGCTCATAGCTTTGGAAGAGATACCGGTGTCAGGATGCACTTGCTTGAGCACCTTG 1454958 Query 1485709 TA 1485710 || Sbjct 1454957 TA 1454956 >seq652 Length=546691 Score = 114 bits (126), Expect = 2e-19 Identities = 172/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| || ||||| || ||||| || || || ||| |||| || || ||| | | Sbjct 453267 TGTACTTGGTAACTGCCTTAGTTCCCTCAGACACAGCATGCTTGGCGAGCTCTCCGGGAA 453326 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| || |||||||| || ||||| | | | ||| || ||||| || Sbjct 453327 GCAAAAGGCGAACTGCGGTCTGAATTTCGCGTGAGGTCAACGTCTTTGTATTGTT-GTAA 453385 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | || || | ||||||| | | | ||||| |||| || || |||||| |||||| Sbjct 453386 GAAGCAAGCTTGGCGGCCTCAGAGGCAATGCGTTCGAACAAATCACCGACAAATGAGTTC 453445 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | |||| ||||| || ||| || ||||| ||||||||||||||| Sbjct 453446 ATGATGCTCATAGCTTTGGAAGAGATACCGGTGTCAGGATGCACTTGCTTGAGCACCTTG 453505 Query 1485709 TA 1485710 || Sbjct 453506 TA 453507 >seq864 Length=1598700 Score = 100 bits (110), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| || || || |||||||| | || || | ||| |||||||| || ||||| || Sbjct 469477 TCCAGAGNCCATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTTCCNCA 469536 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 ||| || | |||| | ||| || ||||| ||||||| |||| ||||||||||||| Sbjct 469537 AGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCCCT 469596 Query 2071997 TGCGCTTGCCGCCGCC 2072012 | ||||| |||||||| Sbjct 469597 TACGCTTCCCGCCGCC 469612 >seq932 Length=795108 Score = 93.3 bits (102), Expect = 7e-13 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 2071877 TCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCA 2071936 |||| || || || |||||||| | || || | ||| |||||||| || ||||| || Sbjct 206272 TCCAGAGTCCATAGAAGAGATCCCTTGCACGCTGCTC-TCCTTGCCATGATTCTTCCGCA 206214 Query 2071937 GGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 2071996 ||| || | |||| | ||| || ||||| ||||||| |||| ||||||||||||| Sbjct 206213 AGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCGCCCT 206154 Query 2071997 TGCGCTTGCCGCCGCC 2072012 | ||||| |||||||| Sbjct 206153 TACGCTTCCCGCCGCC 206138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916126941367997