Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq492 132 3e-26 seq557 131 1e-25 seq475 109 4e-19 seq99 93.3 3e-14 >seq492 Length=1085467 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||||||||||||||| ||||| | |||| | || Sbjct 148069 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148128 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | || |||||||| Sbjct 148129 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 148188 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | |||| || || |||||| || | || || || Sbjct 148189 TGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTT 148248 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| ||||||||||||||| Sbjct 148249 TTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 148281 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||||||||||||||| ||||| | |||| | || Sbjct 148297 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148356 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | || |||||||| Sbjct 148357 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 148416 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | |||| || || |||||| || | || || || Sbjct 148417 TGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTT 148476 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| ||||||||||||||| Sbjct 148477 TTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 148509 Score = 132 bits (146), Expect = 3e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||||||||||||||| ||||| | |||| | || Sbjct 148525 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCC 148584 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | || |||||||| Sbjct 148585 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCC 148644 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | |||| || || |||||| || | || || || Sbjct 148645 TGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTT 148704 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGA 34986 || |||||||||||||| ||||||||||||||| ||||| Sbjct 148705 TTGCCCGTGAGGGTCTTCACAAAGATCTGCATGGCTGTGGA 148745 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| || ||||||||| ||||| || || | | | || |||| Sbjct 146929 AGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCC 146988 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| ||||| || |||||||| |||| | ||||||||||| Sbjct 146989 TCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCC 147048 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || || | | || | || | ||| || |||| || || ||| Sbjct 147049 TGGATCTTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTC 147108 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || ||||| ||||| |||||||| Sbjct 147109 TTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| || | || ||| ||||||||||| ||||| | | | || |||| Sbjct 147384 CAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACCATC 147443 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || ||||| ||||| || |||||||| | || | ||||||||||| Sbjct 147444 CTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTC 147503 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || || ||| | || | || | ||| || |||| ||||| || Sbjct 147504 CTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTATAGT 147563 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || | ||||| ||||| |||||||| Sbjct 147564 TTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 >seq557 Length=252103 Score = 131 bits (144), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| ||||||||||||||| ||||| | | |||| | || Sbjct 154953 AGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGGTGCGTCCGTCC 154894 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | || |||||||| Sbjct 154893 TCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTC--GGGGGATGCCTTCCTTGTCC 154836 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | ||||| |||||| | |||| || || |||||| || | || || || Sbjct 154835 TGGATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTT 154776 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGGA 34986 || |||||||||||||| ||||||||||||||| ||||| Sbjct 154775 TTGCCCGTGAGGGTCTTCACAAAGATCTGCATGGCTGTGGA 154735 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||| ||||||||||| ||||| | | || | || Sbjct 155862 AGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155803 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| || ||||| || | || | ||||||||||| Sbjct 155802 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 155743 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || | ||| || |||| || || | Sbjct 155742 TGGATCTTAGTCTTCAC--ATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAG 155685 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || | ||||| ||||| ||||||||| Sbjct 155684 TCTTTCCAGTCAACGTCTTCACAAAAATCTGCATG 155650 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||| ||||||||||| ||||| | | || | || Sbjct 155634 AGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155575 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||| ||||| || ||||| || | || | ||||||||||| Sbjct 155574 TCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCC 155515 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || | ||| || |||| || || | Sbjct 155514 TGGATCTTAGTCTTCAC--ATTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAG 155457 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || | ||||| || || |||||||| Sbjct 155456 TCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||||| |||| ||||||||||||||| ||||| | | || | || Sbjct 155179 AGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCC 155120 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || ||||| || || | || |||||||| Sbjct 155119 TCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATC--CGGGGATGCCTTCCTTGTCC 155062 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || || | || || ||| || |||| ||| || | Sbjct 155061 TGAATCTTCGTCTTCAC--ATTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAG 155004 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||||| || | || || || || ||||||||| Sbjct 155003 TCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATG 154969 >seq475 Length=1546706 Score = 109 bits (120), Expect = 4e-19 Identities = 142/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || |||||||| ||||| | | | || || || |||| |||||||||||| || Sbjct 934429 CTCCTTTTGGATGTTATAATCCGACAAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAA 934488 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || ||||| || || | ||||||||||| | || ||| ||||| Sbjct 934489 AATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTTGGATCTTTGACTTGACATT 934548 Query 34906 TGCTATCGAT-TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTA 34964 ||| | || | || | || || |||| ||| |||||||| || || || ||||| | Sbjct 934549 TGC-AACGTTGTCCGACGATTCTACCTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGA 934607 Query 34965 CAAAGATCTGCATG 34978 | || ||||||||| Sbjct 934608 CGAAAATCTGCATG 934621 >seq99 Length=379092 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 |||||| || ||||| || || || | | | || || || |||| |||||||||||| || Sbjct 173893 CTCCTT-TGGATGTTGTAATC-GACAAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAA 173950 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||||| || || ||||| || || | ||||||||||| | || ||| ||||| Sbjct 173951 AATCAGACGCTGTTGGTCCTGAGGAATGCCCTCCTTGTCTTGGATCTTTGACTTGACATT 174010 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 ||| || || | || || |||| ||| |||||||| || || || ||||| || Sbjct 174011 TGCAATGTTGTCCGATGATTCTACCTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGAC 174070 Query 34966 AAAGATCTGCATG 34978 || ||||||||| Sbjct 174071 GAAAATCTGCATG 174083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325688342385137