Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_022976.1 Length=75894 Score E Sequences producing significant alignments: (Bits) Value seq160 192 3e-44 seq363 122 4e-23 >seq160 Length=568654 Score = 192 bits (212), Expect = 3e-44 Identities = 464/696 (67%), Gaps = 15/696 (2%) Strand=Plus/Minus Query 66088 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 66147 ||| ||||||| ||||||| ||| |||| ||| || || |||| ||| ||| |||| Sbjct 244256 ATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGGGGA 244197 Query 66148 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66207 || || || || ||||| ||||||||||| || || | || ||| ||||||||| Sbjct 244196 CGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCACGCG 244137 Query 66208 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66267 || || | ||||| ||| ||| || | |||||| | | |||||||||| ||| | || Sbjct 244136 GTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCTCTC 244077 Query 66268 GACCCCGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 66327 || | |||||| | |||||| || | ||| | ||| || | |||||| Sbjct 244076 GATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAGCCG 244017 Query 66328 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66387 || || || ||||| || || || |||| || | | || || || | | Sbjct 244016 GATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATCGAT 243957 Query 66388 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66447 || | || ||||| || ||||| || || |||||| | || ||| ||||||| || || Sbjct 243956 ATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAAATG 243897 Query 66448 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACC 66507 || ||| ||||||||| |||| || || | ||| || || | || || | || Sbjct 243896 GGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTAACG 243837 Query 66508 GGCACCATCTCCAGCACCAACACGCTG-ACGCTCTGGGTCAACCAGTTGCGCGAGAAGAT 66566 || | || | | | | || ||| | ||| |||||||| | || |||||| Sbjct 243836 GGTATTATTGCGAAGAGCCGGAC-CTGTGTGGTCTTTATCAACCAGATCCGATTGAAGAT 243778 Query 66567 CGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGT 66622 ||| |||| | ||| |||||| || || ||||| || || || | | || Sbjct 243777 CGG---CGTGATGTTCGGCAGCCCCGAA----ACGACTACGGGTGGCAACGCACTTAAGT 243725 Query 66623 TCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAG 66681 | || ||| | || ||||| | ||||| |||| | ||| ||||| ||||| || Sbjct 243724 TTTATAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAGCGATAAG 243666 Query 66682 GCTGTCGGCAACCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66741 | || || || || |||||||| || || |||||||||||| ||||||||||| |||| Sbjct 243665 GTCGTGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCCGTTCCGC 243606 Query 66742 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 66777 | |||||| || ||||||| || |||||| Sbjct 243605 GAGCATGAGTTCGATATCATGTACGGCGAAGGCATC 243570 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 66322 CAGCCGGA-CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 66380 |||||||| ||| ||||||||||| ||||| || || || |||| ||| || || || Sbjct 395860 CAGCCGGATCAC-GGCGAGCAGGCTCTGGAAATTGTCGAGATCCTGGTCCGATCGGG-GA 395803 Query 66381 GCTGTCCATCGTCGTCGTT---GACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 66437 | || || ||| ||||| || || ||||| ||| ||||||| || ||||||||||| Sbjct 395802 -CAATCGAT-GTCCTCGTTCTGGATTCAGTGGCTGCCTTGGTGCCCCGTGCCGAGCTCGA 395745 Query 66438 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 66497 ||| || || || || ||| | || |||| || || || ||| || |||||||| Sbjct 395744 AGGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGTCTTATGAGCCAAGCCATGCG 395685 Query 66498 CAAGCTCACCGG 66509 || |||||||| Sbjct 395684 AAAACTCACCGG 395673 >seq363 Length=24173 Score = 122 bits (134), Expect = 4e-23 Identities = 382/582 (66%), Gaps = 16/582 (3%) Strand=Plus/Minus Query 66157 GAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGGCCAAT 66216 ||||| || ||||| ||||| || || || || | || | || ||| | | || | Sbjct 21840 GAAATATATGGCCCGGAATCATCCGGTAAACCA-CGCTC-GCCTGCACACCATTGCGGAA 21783 Query 66217 GCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACCCCGAG 66276 ||||| || | ||||| | | ||||| | || || || || | || || || | Sbjct 21782 GCGCAAAAAACGGGTGGGATCTGCGCCTTTGTGGATGCGGAACATGCGCTTGATCCGGTC 21723 Query 66277 TACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGC 66336 |||||| |||||||| || || || | ||| || | |||||||| || || Sbjct 21722 TACGCCCGCAAACTCGGTGTTGATCTGGATGAACTCCTGATTTCACAGCCGGATACAGGT 21663 Query 66337 GAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTC 66396 |||||||| || |||||| ||| || || ||||| | | || || | || Sbjct 21662 GAGCAGGCGCTTGAGATCACCGACACGCTGGTGCGCTCTGGAGCGGTGGATATTCTGGTG 21603 Query 66397 GTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGT 66456 || || || ||||| || || |||||||| ||| | ||||| || || || ||| | Sbjct 21602 GTCGATTCGGTGGCAGCGCTCACACCGCGCGCAGAGATTGAAGGGGAGATGGGTGAC--T 21545 Query 66457 CACGTC--GGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACCGGCACCA 66514 ||| || || || || ||||| || ||| ||||| || || | |||| ||| Sbjct 21544 CACTTCCCGGTCTTCAGGCGCGGCTGATGAGCCAGGCGTTGA--AAATTGACCGCGTCCA 21487 Query 66515 TCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAGAAGATCGGCA--A 66572 ||||| || || ||| || | | | |||||||| | ||| ||| ||||| | Sbjct 21486 TCTCCCGCTCCCGCACCATGGTGATTTTCATCAACCAGATCCGCATGAAAATCGGTGTGA 21427 Query 66573 CGTGGGCTACGGCCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGTTCTACGCCTC 66632 || | | ||||| ||||| || || || || || || | | ||||| |||| Sbjct 21426 TGTTTGGAA--GCCCG---GAGACAACAACCGGTGGCAATGCGCTCAAATTCTATTCCTC 21372 Query 66633 AGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAA 66692 |||||| | ||| |||| ||||| | | || ||| | | || |||| |||||| Sbjct 21371 CGTCCGCCTTGATATCCGCCGCATTGGCGCCATCAAG-AGCGTGACGAGGTGACCGGCAA 21313 Query 66693 CCGCACCCGGGTGAAAGTCGTCAAGAACAAGCTGGCCCCGCC 66734 || ||||| || ||||||||||| |||||| |||| ||||| Sbjct 21312 CCAGACCCGCGTTAAAGTCGTCAAAAACAAGGTGGCGCCGCC 21271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242732677778565