Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_022988.1 Length=74210 Score E Sequences producing significant alignments: (Bits) Value seq160 201 5e-47 >seq160 Length=568654 Score = 201 bits (222), Expect = 5e-47 Identities = 466/696 (67%), Gaps = 15/696 (2%) Strand=Plus/Minus Query 64677 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGC 64736 ||| ||||||| ||||||| ||| |||| ||| || || |||| ||| ||| |||| Sbjct 244256 ATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGGGGA 244197 Query 64737 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 64796 || || || || ||||| ||||||||||| || || | || ||| ||||||||| Sbjct 244196 CGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCACGCG 244137 Query 64797 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 64856 || || | ||||| ||| ||| || | |||||| | | |||||||||| ||| | || Sbjct 244136 GTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCTCTC 244077 Query 64857 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCG 64916 || | |||||| | |||||| || | ||| | ||| || | |||||| Sbjct 244076 GATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAGCCG 244017 Query 64917 GACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 64976 || || || ||||| || || || |||| || | | || || || | | Sbjct 244016 GATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATCGAT 243957 Query 64977 ATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 65036 || | || ||||| || ||||| || || |||||| | || ||| ||||||| || || Sbjct 243956 ATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAAATG 243897 Query 65037 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGCTCACC 65096 || ||| ||||||||| |||| || || | ||| || || | || || | || Sbjct 243896 GGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTAACG 243837 Query 65097 GGCACCATCTCCAGCACCAACACGCTG-ACGCTCTGGGTCAACCAGTTGCGCGAGAAGAT 65155 || | || | | | | || ||| | ||| |||||||| | || |||||| Sbjct 243836 GGTATTATTGCGAAGAGCCGGAC-CTGTGTGGTCTTTATCAACCAGATCCGATTGAAGAT 243778 Query 65156 CGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGCAAGGCTTTGAGGT 65211 ||| |||| | ||| |||||| || || ||||| ||||| || | | || Sbjct 243777 CGG---CGTGATGTTCGGCAGCCCCGAA----ACGACTACGGGTGGCAACGCACTTAAGT 243725 Query 65212 TCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAG 65270 | || ||| | || ||||| | ||||| |||| | ||| ||||| ||||| || Sbjct 243724 TTTATAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAGCGATAAG 243666 Query 65271 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 65330 | || || || || |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct 243665 GTCGTGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCCGTTCCGC 243606 Query 65331 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 65366 | |||||| || ||||||| || |||||| Sbjct 243605 GAGCATGAGTTCGATATCATGTACGGCGAAGGCATC 243570 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 64911 CAGCCGGA-CACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGA 64969 |||||||| ||| ||||||||||| ||||| || || || |||| ||| || || || Sbjct 395860 CAGCCGGATCAC-GGCGAGCAGGCTCTGGAAATTGTCGAGATCCTGGTCCGATCGGG-GA 395803 Query 64970 GCTGTCCATCGTCGTCGTT---GACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGA 65026 | || || ||| ||||| || || ||||| ||| ||||||| || ||||||||||| Sbjct 395802 -CAATCGAT-GTCCTCGTTCTGGATTCAGTGGCTGCCTTGGTGCCCCGTGCCGAGCTCGA 395745 Query 65027 AGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCG 65086 ||| || || || || ||| | || |||| || || || ||| || |||||||| Sbjct 395744 AGGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGTCTTATGAGCCAAGCCATGCG 395685 Query 65087 CAAGCTCACCGG 65098 || |||||||| Sbjct 395684 AAAACTCACCGG 395673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 237343951532713