Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq475 122 7e-23 seq557 120 2e-22 seq492 120 2e-22 seq99 100 2e-16 >seq475 Length=1546706 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| ||||||||||| || || || || ||||| ||||||||||||| Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || | ||| || || ||| | |||| | || || ||| | ||| Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| |||||| || | || |||| || |||||| Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAACGTTGTCCGACGATTCTACC 934573 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || |||| || || || || |||||||| Sbjct 934574 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 934620 >seq557 Length=252103 Score = 120 bits (132), Expect = 2e-22 Identities = 168/229 (73%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || | || ||| ||||| | |||||| || || || || || ||||| ||||| | | Sbjct 156559 CCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 156500 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | ||| ||| || || || |||||||| | |||| | ||||| || ||||| Sbjct 156499 AAAG-TACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGG 156441 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || || || || || ||| |||| | ||||| || || | Sbjct 156440 AATACCCTCCTTGTCCTG-GATCTTGGTCTTCACATTTTCAATCGTGTCCGATGACTCAA 156382 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || ||||| || ||||| || || ||||| || |||||||| Sbjct 156381 CTTCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCAT 156334 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||| || |||| ||||| ||||| ||||| |||||||| || || | | Sbjct 155649 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTC 155590 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | ||| || || || || ||||| || | |||| | |||||||| || || Sbjct 155589 AAAG-TACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155531 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || | | || || || ||| | || | || || || || | Sbjct 155530 AATACCCTCCTTGTCCTGGA-TCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAA 155472 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||| ||||| || ||||| || || || || || |||||||| Sbjct 155471 CTTCAAGAGTAATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||| || |||| ||||| ||||| ||||| |||||||| || || | | Sbjct 155877 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTC 155818 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | ||| || || || || ||||| || | |||| | |||||||| || || Sbjct 155817 AAAG-TACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155759 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || || || || || ||| | || | || || || || | Sbjct 155758 AATACCCTCCTTGTCCTG-GATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAA 155700 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || ||||| || ||||| || || || ||||| |||||||| Sbjct 155699 CTTCAAGCGTAATAGTCTTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 95.1 bits (104), Expect = 9e-15 Identities = 162/229 (71%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||| || |||| ||||| ||||| || || |||||||| || || | | Sbjct 155194 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTC 155135 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || | | ||| || || || || ||||| || | |||| | |||||||||| || Sbjct 155134 AAAG-TACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCG--GG 155078 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||| || ||| || || || ||| | || | |||||| || || | Sbjct 155077 GATGCCTTCCTTGTCCTG-AATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGACTCCA 155019 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || ||||| || || || || ||||| || || |||||||| Sbjct 155018 CCTCAAGGGTAATAGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCAT 154970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630 |||| || | ||| | || || ||||| || || || || || | ||| ||| || Sbjct 156093 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAA-GGTTCGGCC 156035 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| | ||||| | ||||| || || ||||||||||| || Sbjct 156034 ATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTT 155975 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || || || || || ||| |||| | ||||| || ||| || ||||| || | Sbjct 155974 ATCCTG-GATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAA 155916 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || | || || ||||| |||||||| Sbjct 155915 TCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630 |||| || | ||| | || || ||||| || || || || || | ||| ||| || Sbjct 156321 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAA-GGTTCGGCC 156263 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| | ||||| | ||||| || || ||||||||||| || Sbjct 156262 ATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTT 156203 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAG-AGTT 29748 || || || || || || ||| |||| | || || || || |||||||| || Sbjct 156202 ATCCTG-GATCTTGGTCTTCACATTTTC-ATCGTATCCGATGACTCAACTTCAAGCGGTA 156145 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||| || || ||||| || |||||||| Sbjct 156144 ATAGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 >seq492 Length=1085467 Score = 120 bits (132), Expect = 2e-22 Identities = 160/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAGA 29630 |||||||||| ||| | || || ||||| |||||||| || || | ||| ||| ||| Sbjct 147382 CGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAA-GGTACGACC 147440 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || |||||||| | |||| | ||||| || || ||||| ||||| || Sbjct 147441 ATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTT 147500 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||| || ||| || || || || | || | || || || || |||||||| |||| Sbjct 147501 GTCCTG-AATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTA 147559 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| ||||| || || || ||||| |||||||| Sbjct 147560 TAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 || || | || ||| ||||| | ||||| || || || || || ||||| ||||| | | Sbjct 146914 CCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 146973 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || ||| ||| ||| || || || |||||||| | |||| | ||||| || ||||| Sbjct 146974 AA-GGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGG 147032 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||||||||| ||||| || || || || || ||| |||| | ||||| || || | Sbjct 147033 AATACCCTCCTTGTCCTG-GATCTTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCA 147091 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | ||||| || || || || || || | || || ||||| |||||||| Sbjct 147092 CCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 100 bits (110), Expect = 2e-16 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGCAATGGTGCGAG 29629 ||||| ||||| ||| | || || ||||| |||||||| || || | ||| | | || Sbjct 147837 ACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAG-TACGTC 147895 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 || || || || || ||||| | |||| | |||||||| || ||||||||||| | Sbjct 147896 CGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCT 147955 Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 |||| || ||| || || || ||| | || | ||||| || || |||||||| || Sbjct 147956 TGTCCTG-AATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTA 148014 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| |||||||| Sbjct 148015 ATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 >seq99 Length=379092 Score = 100 bits (110), Expect = 2e-16 Identities = 160/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || ||| ||||||||||| || || || || |||| ||||| ||||| || Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTC-CTTTGGATGTTGTAATCGACA 173916 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || | ||| || || ||| | |||| | || || ||| | ||| Sbjct 173917 A-GGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| |||||||| | ||| |||||| || | | |||| || |||||| Sbjct 173976 ATGCCCTCCTTGTCTTGGATCTTTGACTTGACATTTGCAATGTTGTCCGATGATTCTACC 174035 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || |||| || || || || |||||||| Sbjct 174036 TCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCAT 174082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385213927673343