Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq492 116 4e-21 seq557 93.3 4e-14 seq489 87.8 2e-12 seq28 87.8 2e-12 >seq492 Length=1085467 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| | |||||| || | ||| | |||||| ||||| || |||||||| || ||| Sbjct 147826 CCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147885 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||| || || || || ||||| | |||||||| |||||||||||||| Sbjct 147886 AAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGA 147945 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| | | | || || ||| | | || | ||||| | || || || Sbjct 147946 ATACCCTCCTTGTC-CTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAAC 148004 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || | |||||| || ||||| || || || || || ||||| Sbjct 148005 TTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 >seq557 Length=252103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| | || | |||| || || ||||| || |||||||| || || Sbjct 155650 GCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACT 155591 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||| || || || || || || | |||||||| |||||||||||||| Sbjct 155590 CAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGG 155531 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || || || ||||| || || || | | || | ||| || | | || || Sbjct 155530 AATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAAC 155471 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| ||| | ||||| || |||||||| || ||||| || |||||| Sbjct 155470 TTCAAGAGTAATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCATA 155422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || | ||||| ||||| || || || ||||||||||||||| Sbjct 156559 CCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 156500 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | || || || || || ||||| | |||||||| ||||| ||||| || Sbjct 156499 AAAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGA 156440 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || || | | ||| | |||||| | | || ||| Sbjct 156439 ATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGATGACTCAACT 156380 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| || | ||||| || ||||| || || ||||| || |||||| Sbjct 156379 TCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCATA 156333 >seq489 Length=1032923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 50517 GAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATG 50576 || || |||||| | || ||| | || ||||| ||| || | || |||||||| || ||| Sbjct 355178 GAGAAGGAGTTTGTGACAGACTCATTGCCCGTTGCACTGATTGGAATGAACGCGGATATG 355237 Query 50577 ATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAA 50636 ||| | || ||||| | ||||||| ||||| || || |||||| | |||| Sbjct 355238 ATGAGGGAATACATCTCTTACTGTGCAGACCGATTGCTGCTGTCGCTGGGTTATGGGAAA 355297 Query 50637 TACTATAATGCACGTAACCCCTTTCCGTTTATG-AATAACATATCGTTGGAGGGCAAAAC 50695 || |||||| | || ||| | ||| ||| | || || | ||||| || || Sbjct 355298 GTATACAATGCAACACAGCCATTTGACTGGATGGAATTA-ATTTCCATTGAGGGGAAGAC 355356 Query 50696 AAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50730 ||||||||||| |||||||| || |||||| ||| Sbjct 355357 CAACTTTTTCGAGAGACGTGTGGGTGAATACCAAA 355391 >seq28 Length=612614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 50517 GAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGCATGAACGCAGACATG 50576 || || |||||| | |||||| | || ||||| ||| || | || |||||||| || ||| Sbjct 279121 GAGAAGGAGTTTGTGACGGACTCATTGCCCGTTGCACTGATTGGAATGAACGCGGATATG 279062 Query 50577 ATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCAGCTGGGACAACCGAAA 50636 ||| | || ||||| | |||||| ||||| || || |||||| | |||| Sbjct 279061 ATGAGGGAATACATCTCTTACTGTGCAGATCGATTGCTGCTGTCGCTGGGTTATGGGAAA 279002 Query 50637 TACTATAATGCACGTAACCCCTTTCCGTTTATG-AATAACATATCGTTGGAGGGCAAAAC 50695 || |||||| | || ||| | ||| ||| | || || | ||||| || || Sbjct 279001 GTATACAATGCAACACAGCCATTTGACTGGATGGAATTA-ATTTCCATTGAGGGGAAGAC 278943 Query 50696 AAACTTTTTCGAAAGACGTGTAGGCGAATACAAAA 50730 ||||||||||| |||||||| || |||||| ||| Sbjct 278942 CAACTTTTTCGAGAGACGTGTGGGTGAATACCAAA 278908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488537142063600