Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq278 168 2e-36 seq160 156 1e-32 seq376 129 2e-24 >seq278 Length=63877 Score = 168 bits (186), Expect = 2e-36 Identities = 302/441 (68%), Gaps = 0/441 (0%) Strand=Plus/Minus Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816 |||||| ||| |||| | |||| || ||||| | ||||||||| | |||||||||| Sbjct 18575 AAAATCCAATATTCTGCTCATTGGTCCGACTGGCTGCGGTAAAACACTGCTTGCTCAAAC 18516 Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876 |||| || | ||||||| | | || || || || || | | || ||||| Sbjct 18515 GCTGGCGCGCATCATTGATGTACCATTCACCATGTCAGACGCGACAACACTGACCGAAGC 18456 Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTA 188936 |||||||| |||||||| || || || | | || | | || || || ||||| Sbjct 18455 GGGTTATGTGGGTGAAGACGTTGAGAATATCATTCTGAAACTGCTTCAGGCTGCGGATTA 18396 Query 188937 CGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAG 188996 | | ||| || |||| || || || ||||| ||||| | || || ||| | | Sbjct 18395 TAACGTTGAACGTGCTCAACGCGGCATCGTCTATATTGATGAGATCGACAAGATTTCCCG 18336 Query 188997 AAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTT 189056 ||||| || | | ||||| || || ||||| || || || || || ||||| || | Sbjct 18335 CAAATCCGATAATCCGTCCATCACACGCGATGTGTCAGGTGAGGGCGTGCAGCAGGCGCT 18276 Query 189057 ATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCC 189116 || |||||||| ||||| || ||||| | || || || || |||||||||||||| || Sbjct 18275 CTTGAAAATCATGGAAGGCACTGTTGCAAGCGTACCACCACAGGGTGGTCGTAAACATCC 18216 Query 189117 TCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176 || || ||| | || | | |||||| | |||||| ||||||| || || || || Sbjct 18215 GCAGCAGGAATTCCTGCAGGTGGATACAGCAAATATCCTGTTTATCTCAGGCGGCGCTTT 18156 Query 189177 TGATGGTCTTGAAAACATTAT 189197 || |||||||| || ||||| Sbjct 18155 TGCCGGTCTTGATAAAATTAT 18135 >seq160 Length=568654 Score = 156 bits (172), Expect = 1e-32 Identities = 223/314 (71%), Gaps = 0/314 (0%) Strand=Plus/Plus Query 188848 ATCTCTGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTA 188907 ||| | ||||| || | | || ||||| || || || |||||||| || || || | Sbjct 235124 ATCGCCGATGCGACGAGTCTGACCGAAGCCGGCTACGTCGGTGAAGACGTTGAGAATATC 235183 Query 188908 TTGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTA 188967 | || || | | || || ||||| ||| || ||| || | || || || || Sbjct 235184 ATCGTTAGTCTGCTGCAGGCTGCTGACGGCGACATTGAACGTGCCCAGCGAGGCATCGTC 235243 Query 188968 TATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGAT 189027 || ||||| ||| | |||||||||||| | || |||| | | || ||||| |||||| Sbjct 235244 TACATCGACGAAATCGATAAAATTGCTCGCAAGAGCGAAAACCCGTCGATTACACGAGAT 235303 Query 189028 GTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAA 189087 || || || ||||| || ||||| || | || |||||||| |||||||| || || || Sbjct 235304 GTCTCCGGGGAAGGGGTGCAGCAGGCACTTTTGAAAATCATCGAAGGTACCGTCGCCAAT 235363 Query 189088 GTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACT 189147 ||||||||| | || ||||| |||||||| || || ||| | ||| || | || || | | Sbjct 235364 GTTCCTCCTAAGGGCGGTCGGAAACACCCGCAACAGGAATTTCTTCAAGTCGACACGAGT 235423 Query 189148 AATATCTTGTTTAT 189161 |||||||||| || Sbjct 235424 GATATCTTGTTCAT 235437 >seq376 Length=27331 Score = 129 bits (142), Expect = 2e-24 Identities = 296/443 (67%), Gaps = 2/443 (0%) Strand=Plus/Plus Query 188757 AAAATCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAAC 188816 ||| || ||| ||||| | || || || || |||| ||||| || || | || || || Sbjct 24797 AAAGTCGAATATTCTTCTCGTCGGGCCAACCGGTTGCGGTAAGACCTTGCTGGCCCAGAC 24856 Query 188817 ATTGGCTGATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGC 188876 | || || | |||| || | | || | ||||| || | | || || || Sbjct 24857 CCTCGCACGGATTATCGATGTGCCATTTACGATGGCAGATGCTACGACGCTGACCGAGGC 24916 Query 188877 TGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCAGCTGATTA 188936 || ||||| || |||||||| ||||| | | || | | || || |||||||| Sbjct 24917 GGGCTATGTTGGCGAAGATGTTGAAAATATCGTTCTGAAGCTGCTTCAGGCGGCTGATTA 24976 Query 188937 CGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAG 188996 | || ||||| ||| | ||||| || || ||||| || ||| | || || || | | Sbjct 24977 CAATGTCGAACG-GCGCAGCGTGGCATCGTCTATATTGACGAAATCGACAAGATATCGCG 25035 Query 188997 AAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTT 189056 || || || | | ||||| || || || || ||||||||| || ||||| || || Sbjct 25036 CAAGTCTGACAATCCGTCCATCACACGCGACGTTAGTGGCGAAGGTGTGCAGCAGGCCTT 25095 Query 189057 ATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCC 189116 | ||||| || ||||| || || || |||||||| |||||||| ||||||||||| Sbjct 25096 GCTCAAAATTAT-GAAGGCACTGTGGCAGCCGTTCCTCCACAAGGTGGGCGTAAACACCC 25154 Query 189117 TCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTT 189176 || || ||| | || || | |||||||| || ||| | || || || || || || Sbjct 25155 ACAGCAGGAATTCCTGCAAGTGGATACAACAAACATCCTCTTCATCTGCGGCGGCGCATT 25214 Query 189177 TGATGGTCTTGAAAACATTATCA 189199 || || || || || || |||| Sbjct 25215 TGCGGGCCTCGATAAAATCATCA 25237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591887494896704