Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq557 122 2e-22 seq492 104 5e-17 >seq557 Length=252103 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || || |||||||| || || || ||| Sbjct 155877 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTC 155818 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||| || || || || || || || || || | || ||||| ||||| Sbjct 155817 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGA 155758 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || ||||| ||||||||||| | || ||| Sbjct 155757 ATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACT 155698 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || ||||||||||| ||||| |||||||| Sbjct 155697 TCAAGCGTAATAGTCTTTCCAGTCAACGTCTTCACAAAAATCTGCAT 155651 Score = 116 bits (128), Expect = 7e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| | | ||| || || | ||| || || || |||||||| || || || ||| Sbjct 155649 CCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTC 155590 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | |||||| || || || || || || || || || | || ||||| ||||| Sbjct 155589 AAAGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGA 155530 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| || || ||||| | || ||||| ||||||||||| | || ||| Sbjct 155529 ATACCCTCCTTGTCCTGGATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACT 155470 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || ||||| ||||| || || |||||||| Sbjct 155469 TCAAGAGTAATAGTCTTTCCAGTCAATGTCTTCACGAAAATCTGCAT 155423 Score = 113 bits (124), Expect = 9e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| |||| |||| ||||| |||||||| ||||| || ||| | ||| || Sbjct 156093 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156034 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| || || | | || || || ||||| || || |||||| Sbjct 156033 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 155974 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| | || |||||||||||||| || | ||| || || | || ||| Sbjct 155973 TCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAATC 155914 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || | |||||| ||||| |||||||| Sbjct 155913 GTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 109 bits (120), Expect = 1e-18 Identities = 166/235 (71%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 || || |||| || | || ||| || || | || |||||||| || ||||| || || | Sbjct 156567 ATTACATACCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGT 156508 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 |||| | | | | ||| || || || || || ||||| || || || | || || | Sbjct 156507 AATCGCTCAAAGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGT 156448 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | || || || || ||||| || || ||||| | || |||||||||||||| || | Sbjct 156447 CGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGATG 156388 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| | || || ||||| || ||||||||||| || || |||||||| Sbjct 156387 ACTCAACTTCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCAT 156334 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||| |||| |||| ||||| |||||||| ||||| || ||| | ||| || Sbjct 156321 CGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCCA 156262 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||| || || | | || || || ||||| || || |||||| Sbjct 156261 TCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTTA 156202 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTA-T 82774 || || ||||| | || ||||||||| ||||||| | || ||||| | | || | Sbjct 156201 TCCTGGATCTTGGTCTTCACATTTTCA-TCGTATCCGATGACTCAACTTCAAGCGGTAAT 156143 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| || || |||||||| Sbjct 156142 AGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 >seq492 Length=1085467 Score = 104 bits (114), Expect = 5e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 || || |||| || | || ||| || || | ||| |||||||| || ||||| || || | Sbjct 146906 ATTACATACCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGT 146965 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 |||| | | | ||| || || || || || ||||| || || || | || || | Sbjct 146966 AATCGCTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGT 147025 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 | || || || || ||||| || || ||||| | || ||||||||||| || || | Sbjct 147026 CGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACATTTTCAATGGTGTCCGACG 147085 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || |||||||| || || | |||||| ||||| |||||||| Sbjct 147086 ACTCCACCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981813073040697