Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq475 113 3e-20 seq492 109 4e-19 seq99 105 4e-18 >seq475 Length=1546706 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||||||| || || ||| ||||| ||||| ||||| || Sbjct 934394 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGAC 934453 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || ||||| |||||||| |||||||||||||||| |||||| || || || || Sbjct 934454 AAGGTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 934513 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACA-TAGTCACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| | | ||| |||| ||||| || Sbjct 934514 ATGCCCTCCTTGTCTTGGATCTT-TGACTTGACATTTGCAACGTTGTCCGACGATTCTAC 934572 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| || || || |||| || || || || |||||||| || Sbjct 934573 CTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGT 934623 >seq492 Length=1085467 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | ||| ||||||| ||| | || |||||| || |||||||| || Sbjct 147825 ACCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACT 147884 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| |||| || | || || || || ||||||| |||||||||||| | || Sbjct 147885 CAAAGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGG 147944 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| ||| || | ||||| || | ||||| || || | Sbjct 147945 AATACCCTCCTTGTCCTGAATCTTC-GTCTTAACATTCTCGATTGTGTCCGAGGACTCAA 148003 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||| ||||| || ||||| || || || ||||| |||||||| Sbjct 148004 CTTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCAT 148052 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || | || ||| | ||| | || ||||| ||| || || |||||||||||| Sbjct 146913 ACCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCT 146972 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | || || || || ||||||| ||||||||| || |||| Sbjct 146973 CAAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGG 147032 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || || | |||| || | |||||| || |||| Sbjct 147033 AATACCCTCCTTGTCCTGGATCTT-GGTCTTCACATTTTCAATGGTGTCCGACGACTCCA 147091 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||| ||||| ||||| || | ||| || ||||| ||||||||| Sbjct 147092 CCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCATA 147141 >seq99 Length=379092 Score = 105 bits (116), Expect = 4e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||||||| || || ||| ||| | |||||||||||| Sbjct 173858 CCTCCGCGCAGACGGAGCACCAAATGGAGGGTTGACTCCTTTGG-ATGTTGTAATCGACA 173916 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || ||||| |||||||| |||||||||||||||| |||||| || || || || Sbjct 173917 AG-GTTCGGTCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGA 173975 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACA-TAGTCACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| | | | | |||| |||||| || Sbjct 173976 ATGCCCTCCTTGTCTTGGATCTT-TGACTTGACATTTGCAATGTTGTCCGATGATTCTAC 174034 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 |||| ||||| || || || |||| || || || || |||||||| || Sbjct 174035 CTCAAGGGTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGT 174085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699501172160