Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq492 105 2e-17 seq557 91.5 3e-13 >seq492 Length=1085467 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || ||||| || || || ||||| || | || ||||| || ||| Sbjct 147137 CAGATTTTTGTGAAGACGCTTACGGGTAAGACGATTACGCTTGAGGTGGAGTCGTCGGAC 147078 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || || || ||| ||| ||| || Sbjct 147077 ACCATTGAAAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAG 147018 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| | || ||||| | || ||| |||||||||| || Sbjct 147017 CGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACCTTGAGCGATTACAACATC 146958 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||||||||||||||| Sbjct 146957 CAGAAGGAGTCTACTCTTCACCTTGT 146932 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | |||||||| ||||| || | ||||| || || ||| Sbjct 148049 CAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCGGAC 147990 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||||| || || || || ||| || || || Sbjct 147989 ACAATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAGCAG 147930 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| || |||||| | || || ||| | |||||| || |||||| | Sbjct 147929 CGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAACATT 147870 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||||||||||||| | || || || ||| | |||||| Sbjct 147869 CAGAAAGAGTCTACATTGCATCTGGTGTTGCGTCTTCGA 147831 >seq557 Length=252103 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || || ||| ||| ||| || | || || ||||| || ||| Sbjct 156417 AAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAGCGTCTGATTTTCGCTGGCAAG 156476 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | || ||||| | |||||| |||||||||| ||||||| |||||||||||||| Sbjct 156477 CAGCTTGAGGATGGTCGTACTTTGAGCGATTACAACATCCAGAAGGAGTCTACTCTTCAT 156536 Query 206374 CTTGT 206378 ||||| Sbjct 156537 CTTGT 156541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181803795445283