Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_025447.1 Length=348532 Score E Sequences producing significant alignments: (Bits) Value seq1105 98.7 2e-15 seq381 98.7 2e-15 seq276 98.7 2e-15 seq269 98.7 2e-15 seq268 98.7 2e-15 seq262 98.7 2e-15 seq249 98.7 2e-15 seq239 98.7 2e-15 seq205 95.1 3e-14 >seq1105 Length=37519 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 10298 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 10356 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 10357 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 10416 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 10417 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 10471 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 10472 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 10530 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 10531 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 10590 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 10591 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 10634 >seq381 Length=26942 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 26098 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 26040 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 26039 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 25980 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 25979 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 25925 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 25924 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 25866 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 25865 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 25806 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 25805 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 25762 >seq276 Length=35306 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 18085 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 18027 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 18026 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 17967 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 17966 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 17912 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 17911 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 17853 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 17852 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 17793 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 17792 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 17749 >seq269 Length=31307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 17877 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 17819 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 17818 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 17759 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 17758 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 17704 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 17703 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 17645 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 17644 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 17585 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 17584 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 17541 >seq268 Length=42779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 17106 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 17164 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 17165 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 17224 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 17225 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 17279 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 17280 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 17338 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 17339 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 17398 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 17399 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 17442 >seq262 Length=94814 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 21100 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 21158 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 21159 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 21218 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 21219 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 21273 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 21274 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 21332 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 21333 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 21392 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 21393 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 21436 >seq249 Length=73938 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 40229 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 40171 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 40170 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 40111 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 40110 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 40056 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 40055 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 39997 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 39996 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 39937 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 39936 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 39893 >seq239 Length=192504 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 299048 TGCTGGTACTAAGTATCGTGGTGAATTTGAAGAACGCATCGACAATT-TGCTAAAAGAAC 299106 |||||||||||| ||| | ||||| ||||||||| | || || || | | | ||| Sbjct 70998 TGCTGGTACTAAATATAGGGGTGAGTTTGAAGAAAG-ATTGAAAAGAATTATGGATGAAA 71056 Query 299107 TAAAGAAACGTGAAAATACTATTGTTTTCATTGATGAAATTCATATTATGGTTGGGGCTG 299166 | ||| | | ||| |||| | | || |||||| |||||| | | | || |||| Sbjct 71057 TTAAGTCTGCTAATAATGTTATTTTAGTAATAGATGAAGTTCATACTTTAATAGGTGCTG 71116 Query 299167 GTTCCGCAAGTAATGGTTCTATGGACATG-AGCAA-TATGCTTAAGCCAGCACTTTCACG 299224 || | ||| | ||| |||| || || ||||| | | ||||| |||||| | | | Sbjct 71117 GTGCTGCAG---AAGGTGCTATTGA--TGCAGCAAATTTACTTAAACCAGCATTGGCTAG 71171 Query 299225 TGGTGAGATTCG-TGTAATTGGTGCAACAACATATGATGAATATCGTAAAAATATCGAGA 299283 |||||| | | |||| ||||||||||||| ||| ||||||||||| |||| |||| Sbjct 71172 AGGTGAGTTGCAATGTA-TTGGTGCAACAACTCTTGAAGAATATCGTAAGCATATAGAGA 71230 Query 299284 AAGATAGTGCATTAACTCGTCGTTTTATGAAAATTGACGTAGTTGAGCCGACAATTGATG 299343 ||||| ||| ||| | |||||| | || |||| ||| || | |||| | Sbjct 71231 AAGATGCTGCTTTAGAAAGACGTTTTCAACCAGTTTTAGTAGGTGAACCAAGTGTTGAGG 71290 Query 299344 AAACTCGTGCAATTGTTAATGGTTTGAAACCAACGTATGAAAAA 299387 ||||| | |||| || |||||| | | | |||||||||| Sbjct 71291 AAACTATCGAAATTCTTTTTGGTTTAAGAGATAGGTATGAAAAA 71334 >seq205 Length=203482 Score = 95.1 bits (104), Expect = 3e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 75560 TTCGGGCCTGTAGCTCAGTGGTAGAGCGGTCGGCTCATAACCGATTGGTCGCAGGATCGT 75619 |||||||| |||||||| |||||||| ||||||||||||||||| ||||| ||| ||| Sbjct 106262 TTCGGGCCCATAGCTCAGCGGTAGAGCCGTCGGCTCATAACCGATAGGTCGTAGGTTCGA 106321 Query 75620 TCCCTGCCAGGCCCACCAAATA 75641 ||||| | ||||||||| ||| Sbjct 106322 TCCCTACTGGGCCCACCACATA 106343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1115155154428887