Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq492 107 2e-18 seq557 93.3 4e-14 >seq492 Length=1085467 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||||||| |||||| ||| || ||||| || || | Sbjct 147175 GACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCG 147234 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| || || ||||| || || || || || |||||| |||| Sbjct 147235 AAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGAATTTTCGTCTTCACA 147294 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| ||||| | ||| | |||||| ||||||| || || Sbjct 147295 TTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTC 147354 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 147355 ACAAAAATCTGCAT 147368 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||| ||| | | |||||||| |||||||||||||| |||| |||||| Sbjct 147381 GCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAGGTACGACC 147440 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || ||||| || || | | || |||||||| || || ||||| || || || || Sbjct 147441 ATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTT 147500 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || ||| || |||| | || | ||||| | | ||| ||||| | ||| | Sbjct 147501 GTCCTGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTTAT 147560 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||||| || || | ||||||||||| Sbjct 147561 AGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||| ||| | | |||||||| || ||||||||||| |||| |||||| Sbjct 147609 GCGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCC 147668 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 || || ||||| || || | |||| |||||||| || || ||||| || || || || Sbjct 147669 GTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTT 147728 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || |||| | || | ||||| | | ||| ||||| | ||| | Sbjct 147729 GTCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAAT 147788 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||| ||||||| || || | ||||||||||| Sbjct 147789 CGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||| ||| | | |||||||| |||||||||||||| |||| ||||| Sbjct 147838 CGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGTCCG 147897 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || || ||||| || || | | || |||||||| ||||| ||||| || || || || Sbjct 147898 TCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTG 147957 Query 132029 TCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || | | | || || | ||| | || | || || | | ||| ||||| | ||| | Sbjct 147958 TC-CTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCAACTTCAAGCGTAAT 148016 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| || || |||| ||| || | |||||||||||| || Sbjct 148017 CGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCATGCCT 148056 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||| ||||||| |||||| ||| || ||||| || || | Sbjct 146947 GACTCCTTCTGGATGTTGTAATCGCTCAAGGTACGACCATCCTCAAGCTGCTTGCCAGCG 147006 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| || || || || || || || || || || || |||| Sbjct 147007 AAAATCAGACGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGTCTTCACA 147066 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | || |||||| || | ||| | ||| ||||| || || || || Sbjct 147067 TTTTCAATGGTGTCCGACGACTCCACCTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTC 147126 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 147127 ACAAAAATCTGCAT 147140 >seq557 Length=252103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || |||||||||||||| |||| ||||| || || ||||| || |||| Sbjct 155161 GACTCCTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCG 155102 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || ||||| ||||| | || |||||||| || || ||| || |||| Sbjct 155101 AAGATCAGGCGCTGCTGATCCG--GGGATGCCTTCCTTGTCCTGAATCTTCGTCTTCACA 155044 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | |||||| || | || | || || || |||| |||||| Sbjct 155043 TTCTCAATAGTGTCCGAGGACTCCACCTCAAGGGTAATAGTCTTTCCGGTCAAAGTTTTC 154984 Query 132110 ATGAAAATCTGCATG 132124 | ||||||||||||| Sbjct 154983 ACGAAAATCTGCATG 154969 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| |||| ||||| || || ||||| || |||| Sbjct 155844 GACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCG 155785 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| ||||| ||||| || || || || || || || |||| Sbjct 155784 AAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTAGTCTTCACA 155725 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| ||||| | ||| | || || ||||||| || || Sbjct 155724 TTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTTCCAGTCAACGTCTTC 155665 Query 132110 ATGAAAATCTGCATGACT 132127 | |||||||||||| || Sbjct 155664 ACAAAAATCTGCATGCCT 155647 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| || | ||| | | | |||||||| || || |||||||| |||| ||| || Sbjct 156094 GCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCC 156035 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || ||||| || || | | || | |||||| || || ||||| || || || || Sbjct 156034 ATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTT 155975 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 ||| || || |||| | ||| | || || | || ||||| || | ||| | Sbjct 155974 ATCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACCTCAAGCGTAAT 155915 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 ||| ||||| || || || || | |||||||||||| || Sbjct 155914 CGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCATGCCT 155875 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/201 (72%), Gaps = 7/201 (3%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA--ATCTTCGAGCTGTTTACCGG 131987 ||||| || ||||||||||||||||||| |||||| || || || ||||| || || | Sbjct 155388 GACTCCTTCTGAATGTTGTAGTCGCTCAAGGTACG-GACCGTCCTCAAGCTGCTTCCCAG 155330 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| |||||||| ||||| ||||| || || || || || | | | || || | | Sbjct 155329 CGAAGATGAGACGCTGCTGATCCGGAGG-ATACCCTCCTTGTC-CTGAATCTTCGTCTTA 155272 Query 132048 AC-TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTT 132106 || | || | ||| || | | ||| || || | || | ||| || || |||| ||| Sbjct 155271 ACATTCTCGATAGTGTC-GAGGACTCAACCTCAAGGGTAATCGTCTTTCCGGTCAAAGTC 155213 Query 132107 TTTATGAAAATCTGCATGACT 132127 || | ||||||||||||| || Sbjct 155212 TTCACGAAAATCTGCATGCCT 155192 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| |||||||||||||| |||| ||||| || || ||||| || |||| Sbjct 155616 GACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCAAGCTGCTTGCCGGCG 155557 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 | || |||||||| ||||| ||||| || || || || || || || |||| Sbjct 155556 AAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGGATCTTAGTCTTCACA 155497 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | | ||| ||||| | || | || || ||||||| || || Sbjct 155496 TTCTCAATCGTATCCGATGACTCAACTTCAAGAGTAATAGTCTTTCCAGTCAATGTCTTC 155437 Query 132110 ATGAAAATCTGCAT 132123 | |||||||||||| Sbjct 155436 ACGAAAATCTGCAT 155423 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 |||||| || | ||| | | | |||||||| || || |||||||| |||| ||| || Sbjct 156322 GCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGGTTCGGCC 156263 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||| || ||||| || || | | || | |||||| || || ||||| || || || || Sbjct 156262 ATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATACCCTCCTT 156203 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG-TCA 132086 ||| || || |||| | ||| | ||||| | | ||| ||||| | || | | Sbjct 156202 ATCCTGGATCTTGGTCTTCACATTTTCATC-GTATCCGATGACTCAACTTCAAGCGGTAA 156144 Query 132087 GCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| || || | |||||||||||| Sbjct 156143 TAGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCAT 156107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476604509570280