Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq557 93.3 4e-14 seq492 82.4 7e-11 >seq557 Length=252103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || ||||| | || ||| | ||||| || | || Sbjct 155650 CATGCAGATTTTTGTGAAGACGTTGACTGGAAAGACTATTACGCTTGAAGTTGA-GTCAT 155708 Query 25234 CG-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATC 25292 || |||| || ||| | || || || || || || |||||||| || ||||||| Sbjct 155709 CGGATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATC 155768 Query 25293 AGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACA 25352 |||| | || |||| || |||||| || || || || | | | | | | || || |||| Sbjct 155769 AGCAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACA 155828 Query 25353 ATATTCAAAAAGAATCCACCATTCA 25377 | ||||| ||||| |||||| |||| Sbjct 155829 ACATTCAGAAAGAGTCCACCCTTCA 155853 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || ||||| || ||||| | || || | ||||| || | || | Sbjct 155423 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATTACTCTTGAAGTTGA-GTCATC 155481 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||| || ||| | || || || || || || |||||||| || |||||||| Sbjct 155482 GGATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCA 155541 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || |||||| || || || || | | | | | | || || ||||| Sbjct 155542 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAA 155601 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 ||||| ||||| |||||| |||| Sbjct 155602 CATTCAGAAAGAGTCCACCCTTCA 155625 >seq492 Length=1085467 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||| || || || || ||||| |||| ||| | ||||| || || Sbjct 148053 CATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTC 147994 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || |||||| | || || || ||| || || |||||||| || |||||||| Sbjct 147993 GGACACAATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 147934 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| | || |||| || || || || || || || | | | | | || || ||||| Sbjct 147933 GCAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAA 147874 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||||| ||||| || || | ||| | ||||| Sbjct 147873 CATTCAGAAAGAGTCTACATTGCATCTGGTGTT 147841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445088151987360