Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq1105 98.7 2e-15 seq381 98.7 2e-15 seq276 98.7 2e-15 seq269 98.7 2e-15 seq268 98.7 2e-15 seq262 98.7 2e-15 seq249 98.7 2e-15 seq239 98.7 2e-15 >seq1105 Length=37519 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 10634 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 10575 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 10574 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 10515 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 10514 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 10456 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 10455 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 10401 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 10400 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 10341 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 10340 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 10298 >seq381 Length=26942 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 25762 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 25821 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 25822 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 25881 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 25882 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 25940 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 25941 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 25995 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 25996 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 26055 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 26056 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 26098 >seq276 Length=35306 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 17749 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 17808 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 17809 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 17868 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 17869 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 17927 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 17928 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 17982 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 17983 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 18042 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 18043 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 18085 >seq269 Length=31307 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 17541 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 17600 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 17601 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 17660 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 17661 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 17719 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 17720 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 17774 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 17775 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 17834 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 17835 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 17877 >seq268 Length=42779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 17442 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 17383 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 17382 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 17323 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 17322 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 17264 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 17263 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 17209 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 17208 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 17149 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 17148 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 17106 >seq262 Length=94814 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 21436 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 21377 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 21376 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 21317 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 21316 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 21258 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 21257 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 21203 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 21202 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 21143 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 21142 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 21100 >seq249 Length=73938 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Plus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 39893 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 39952 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 39953 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 40012 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 40013 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 40071 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 40072 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 40126 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 40127 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 40186 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 40187 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 40229 >seq239 Length=192504 Score = 98.7 bits (108), Expect = 2e-15 Identities = 234/344 (68%), Gaps = 11/344 (3%) Strand=Plus/Minus Query 331946 TTTTTCATACGTTGGTTTCAAACCATTAACAATTGCACGAGTTTCATCAATTGTCGGCTC 332005 |||||||||| | | | |||||| || |||| | |||||| |||| | || || Sbjct 71334 TTTTTCATACCTATCTCTTAAACCAAAAAGAATTTCGATAGTTTCCTCAACACTTGGTTC 71275 Query 332006 AACTACGTCAATTTTCATAAAACGACGAGTTAATGCACTATCTTTCTCGATATTTTTACG 332065 | |||| || | |||||| | ||| ||| ||||||||| |||| ||||| Sbjct 71274 ACCTACTAAAACTGGTTGAAAACGTCTTTCTAAAGCAGCATCTTTCTCTATATGCTTACG 71215 Query 332066 ATATTCATCATATGTTGTTGCACCAATTACA-CGAATCTCACCACGTGAAAGTGCTGGCT 332124 |||||| ||| ||||||||||||| |||| | | |||||| | | | |||||| | Sbjct 71214 ATATTCTTCAAGAGTTGTTGCACCAA-TACATTGCAACTCACCTCTAGCCAATGCTGGTT 71156 Query 332125 TAAGCATA-TTGCT-CATGTCCATAGAACCATTACTTGCGGAACCAGCCCCAACCATAAT 332182 |||| | | ||||| || || |||| ||| | ||| | |||||| || | | | | Sbjct 71155 TAAGTAAATTTGCTGCA--TCAATAGCACCTT---CTGCAGCACCAGCACCTATTAAAGT 71101 Query 332183 ATGAATTTCATCAATGAAAACAATAGTATTTTCACGTTTCTTTAGTTCTTTTAGCA-AAT 332241 ||||| |||||| || | | |||| ||| | | ||| | ||| | | | | Sbjct 71100 ATGAACTTCATCTATTACTAAAATAACATTATTAGCAGACTTAATTTCATCCATAATTCT 71041 Query 332242 TGTCGATGCGTTCTTCAAATTCACCACGATACTTAGTACCAGCA 332285 | || || | ||||||||| ||||| | ||| |||||||||||| Sbjct 71040 TTTCAAT-CTTTCTTCAAACTCACCCCTATATTTAGTACCAGCA 70998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113814373720904