Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq708 95.1 1e-14 seq191 93.3 3e-14 >seq708 Length=363590 Score = 95.1 bits (104), Expect = 1e-14 Identities = 185/271 (68%), Gaps = 2/271 (1%) Strand=Plus/Plus Query 41048 GATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTC 41107 ||||||| | ||||| || || | || ||||| || || || || || || || Sbjct 200701 GATGGCACTTCCACCGTGCCACCTTCTAGCCCAGTTCTATGTCGCAAACGGCGAGCTATC 200760 Query 41108 ATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAG 41167 ||||||| |||| ||| | || | ||||||||||| ||||| ||||| || ||||| Sbjct 200761 ATGTCAAATGTACCAACGCTCCTGCGACATGGGACTTGGGGTACCGTTCAATATAGCATC 200820 Query 41168 TTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGT 41227 |||| | ||||| || | | | || || | || || | ||||| || || ||||| Sbjct 200821 TTATTCGCTGCTAACATGTCTAATCGCCAAGGTGACAGGGCTCAAACCCGGAGACTTTGT 200880 Query 41228 TCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAAC-AAC 41286 || ||| || || |||| | |||| |||||||| ||| | | | || | || Sbjct 200881 CCATGTGTTGGGGGACACACATGTGTACAACAATCACATTGAGGCACTCAAGGAGCAAAT 200940 Query 41287 TGACACGAAAACCTAGACCATTTCCAACGCT 41317 ||| | || | ||| || | ||||||||||| Sbjct 200941 TGAGA-GACAGCCTCGAGCGTTTCCAACGCT 200970 >seq191 Length=259989 Score = 93.3 bits (102), Expect = 3e-14 Identities = 423/655 (65%), Gaps = 18/655 (3%) Strand=Plus/Minus Query 40672 GATACAATTTGAGA-AATCAGTTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGC 40730 ||| ||||||| || |||| || ||| | || || || || | |||||||| || Sbjct 121204 GATTCAATTTGCGAGAATCC-TTCCCGCTTCTCACGACCAAGCGAGTGTTTTGGCGGGGT 121146 Query 40731 ATTGCAGAAGAACTGTTATGGTTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAA 40790 |||| || || || || |||||||| || || | ||| |||| || | |||| Sbjct 121145 GTTGCGGAGGAGCTTTTTTGGTTTATTAAGGGAAGCACTGATGCCAAATTGCTGACAGAG 121086 Query 40791 AGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTTGT-CTAGCATAGGATT 40849 | || || | |||||| | | | | || |||| | |||| || | || || Sbjct 121085 AAGGGGGTCCGAATTTGGGAAGGAAATGGATCAAAAAGCTTTTTGGACTCTCGGGGGTTT 121026 Query 40850 ACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGG 40909 ||| ||| |||| || || || |||||||| || ||||||||||| | |||||| ||||| Sbjct 121025 ACA-GATCGGGAAGAGGGAGACCTTGGTCCCGTGTATGGATTTCAATGGCGACACTTTGG 120967 Query 40910 AGCAAAATATGACACTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTG 40969 || | ||| | | | | | || || | || | |||||| || | || Sbjct 120966 CGCGGAGTATACAAACAAGGATTGCGACTACAGAGGGGCGGGGAAGGATCAGTTG-ACTG 120908 Query 40970 C-GTTATAGATACGATTA--AATCCGATCCCGATAGCC-GACGTATAATATTGTGCGCGT 41025 || || || || ||| ||| | ||| | | | | || || || | | || | Sbjct 120907 ATGTAATTGACACAATTGTTAAT---AACCCAAACGACAGGCGAATGATCATTTCAGCTT 120851 Query 41026 GGAACCCAACGG--ACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTT 41083 ||||||| | || ||| ||||||| | ||||| || || | || ||||| Sbjct 120850 GGAACCCGTGTGCCACTGACAA--GATGGCACTTCCACCGTGCCACCTTCTAGCCCAGTT 120793 Query 41084 TTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACT 41143 || || || || || || ||||||||| |||| ||| | || | ||||||||||| Sbjct 120792 CTATGTCGCAAACGGCGAGCTATCATGTCAAATGTACCAACGCTCCTGCGACATGGGACT 120733 Query 41144 AGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 ||||| ||||| || ||||| |||| | ||||| || | | | || || | || || Sbjct 120732 TGGGGTACCGTTCAATATAGCATCTTATTCCCTGCTAACATGTCTAATCGCCAAGGTGAC 120673 Query 41204 CAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCA 41263 | || || || || ||||| || ||| || || |||| | |||| ||||| Sbjct 120672 AGGGCTCAACCCCGGAGACTTTGTCCATGTGTTGGGGGACACACATGTGTACAACAATCA 120613 Query 41264 CATAGAGCCGTTAACAGAACAACT-GACACGAAAACCTAGACCATTTCCAACGCT 41317 ||| ||| | | | || ||| | || | || | ||| || | ||||||||||| Sbjct 120612 CATTGAGGCACTCAAGGAGCAAATTGAGA-GACAGCCTCGAGCTTTTCCAACGCT 120559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397450560193615