Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq557 131 1e-25 seq492 114 1e-20 seq864 93.3 4e-14 seq932 84.2 2e-11 >seq557 Length=252103 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | |||||||| | ||| || ||||| ||||| || ||||||||||| ||| Sbjct 156105 CCACCGCGGAGGCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTC 156046 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || || ||||| || || ||| |||| | |||||| || || || || Sbjct 156045 AAGGTTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGA 155986 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| ||||| ||||||| | |||| |||| | ||||| | | ||| || Sbjct 155985 ATACCCTCCTTATCCTGGATCTTGGTCTTCACATTTTCAATCGTGTCCGACGATTCCACC 155926 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || ||||| || || |||||||| || ||||| Sbjct 155925 TCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 155879 Score = 111 bits (122), Expect = 1e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 27025 CGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT 27084 |||| | |||||||| | ||| || ||||| ||||| || ||||||||||| |||| | Sbjct 156329 CGCGGAGGCGCAATACTAGATGCAAGGTAGACTCTTTCTGGATATTGTAGTCACTCAAGG 156270 Query 27085 TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACAC 27144 | || | || || ||||| || || ||| |||| | |||||| || || || || | || Sbjct 156269 TTCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGGTCGGGAGGAATAC 156210 Query 27145 CCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTA 27204 |||| ||||| ||||||| | |||| |||| | || || | | |||||||| | Sbjct 156209 CCTCCTTATCCTGGATCTTGGTCTTCACATTTTC-ATCGTATCCGATGACTCAACTTCAA 156151 Query 27205 G-AGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || |||| || || |||| || || || || || |||||| Sbjct 156150 GCGGTAATAGTCTTTCCAGTCAACGTCTTAACGAAAATCTGCATA 156106 Score = 109 bits (120), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || ||||| |||||||| |||| | |||| |||| || Sbjct 154950 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAGGTGCGTCCGTCCTCA 154891 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| | || |||||||| || || || | | || || || || | Sbjct 154890 AGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCGGGGG--ATGCCTTCCTTGTCCTGG 154833 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || ||| | || | | | || | ||||||| || || || || || || || | |||| Sbjct 154832 ATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTTG 154773 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATAGCTG 27252 ||||| || || ||||||||||| ||||| |||| Sbjct 154772 CCCGTGAGGGTCTTCACAAAGATCTGCATGGCTG 154739 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTC-GTCTTCGAGCTGTTTACC 27109 || || || || ||||| ||||||||||||| | | || | ||| || ||||| || || Sbjct 155391 GTGGACTCCTTCTGAATGTTGTAGTCGCTCAAGGTACGGACCGTCCTCAAGCTGCTTCCC 155332 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| |||||||| || | |||||| || || ||||| | || Sbjct 155331 AGCGAAGATGAGACGCTGCTGATCCGGAGG-ATACCCTCCTTGTCCTGAATCTTCGTCTT 155273 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | || ||||| || || || || | || || |||| ||| Sbjct 155272 AACATTCTCGATAGTGTC-GAGGACTCAACCTCAAGGGTAATCGTCTTTCCGGTCAAAGT 155214 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||| || || ||||| Sbjct 155213 CTTCACGAAAATCTGCAT 155196 >seq492 Length=1085467 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| ||| || ||||| ||||| || || |||||||| |||| | | || || Sbjct 147610 CGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTCAAGGTACGTCCG 147669 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || ||| | ||||||||||| || || || || | ||||| || Sbjct 147670 TCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTG 147729 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| | |||| | | || | || || | | |||||||| || || || Sbjct 147730 TCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAATC 147789 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | ||| || |||| || |||||||| || |||||| Sbjct 147790 GTTTTTCCAGTCAATGTCTTCACAAAAATCTGCATA 147825 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| || | || | |||| || | || || || || ||||| |||||||| | Sbjct 148052 TGCCTCCACGGAGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCAC 148111 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 ||| |||| |||| || ||||| || || ||| | || |||||||| || ||||| | Sbjct 148112 TCAACGTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGG 148171 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || ||| ||| | || | | | || | ||||| | || || | Sbjct 148172 GGATGCCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGA 148231 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||||||| || || ||||||||||| ||||| Sbjct 148232 CCTCGAGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 107 bits (118), Expect = 2e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| |||| |||| |||| || ||||| || || Sbjct 148540 GTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGCTTGCCT 148599 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | || || || || ||| ||| | || Sbjct 148600 GCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGTCTTG 148659 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||||||| || || Sbjct 148660 ACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTC 148719 Query 27231 TTCACAAAGATTTGCATAGCTG 27252 ||||||||||| ||||| |||| Sbjct 148720 TTCACAAAGATCTGCATGGCTG 148741 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| |||| |||| |||| || ||||| || || Sbjct 148312 GTGGACTCCTTCTGAATGTTGTAGTCACTCAACGTGCGTCCGTCCTCAAGCTGCTTGCCT 148371 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || ||||| || | || || || || ||| ||| | || Sbjct 148372 GCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCTTCCTTGTCCTGGATTTTGGTCTTG 148431 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||||||| || || Sbjct 148432 ACGTTCTCAATCGTGTCCGAGGACTCGACCTCGAGTGTGATTGTTTTGCCCGTGAGGGTC 148491 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 148492 TTCACAAAGATCTGCAT 148508 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| ||||| || || ||||||||||||| | | || | || || Sbjct 147160 ACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGACCATCCTCA 147219 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || ||| |||| |||||||| || || || || | ||||| || || Sbjct 147220 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCTTGTCCTGA 147279 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 || || | |||| | |||| || || | | |||||||| || || || | ||| Sbjct 147280 ATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAATCGTTTTT 147339 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || |||| || |||||||| || |||||| Sbjct 147340 CCAGTCAATGTCTTCACAAAAATCTGCATA 147369 >seq864 Length=1598700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 193/286 (67%), Gaps = 5/286 (2%) Strand=Plus/Plus Query 131654 TTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCT 131713 |||||||||||||| || | ||| | | || || ||||| || || | |||||| Sbjct 469458 TTCATAAACAAATCNGGAATCCAGAGNCCATAGAAGAGATCCCTTGCACGCTGCTCTTC- 469516 Query 131714 GTACCCATAAtt-tttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAA 131772 | |||| ||| || ||| | || || || | |||||| ||||||||||| ||||| Sbjct 469517 CTTGCCATGATTCTTCCNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAA 469576 Query 131773 ATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTT 131829 || | ||| | ||||| || ||||| ||||| |||| ||||| | | ||| Sbjct 469577 GTAGATTGCAAAGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTC 469636 Query 131830 GTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA 131889 ||||| || | | ||| || | | || |||| | |||||||||| ||| || Sbjct 469637 ATTGTACACCCTNAGCATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATA 469696 Query 131890 GCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCG 131935 | | | || | ||||| ||||| ||| ||| || ||||| ||| Sbjct 469697 GGACCGAGTGCCCCTGATGTTGTGGACGGCGAGGCCGATACCGCCG 469742 >seq932 Length=795108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 192/286 (67%), Gaps = 6/286 (2%) Strand=Plus/Minus Query 131654 TTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCT 131713 |||||||||||||| || | ||| | | || || ||||| || || | |||| || Sbjct 206291 TTCATAAACAAATCTGGAATCCAGAGTCCATAGAAGAGATCCCTTGCACGCTGCTCTCCT 206232 Query 131714 GTACCCATAAttttttt-CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAA 131772 |||| ||| || ||| | || || || | |||||| ||||||||||| ||||| Sbjct 206231 TG--CCATGATTCTTCCGCAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAA 206174 Query 131773 ATACACTGCCATTGCGCCTTTGCGCTT---ACCGCCTTGATTAACATGACGAACCATGTT 131829 || | ||| | ||||| || ||||| ||||| |||| ||||| | | ||| Sbjct 206173 GTAGATTGCAAAGGCGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTC 206114 Query 131830 GTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTA 131889 ||||| || | | ||| || | | || |||| | |||||||||| ||| || Sbjct 206113 ATTGTACACCCTGAGCATAGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATA 206054 Query 131890 GCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCG 131935 | | | || | ||||| ||||| ||| ||| || ||||| ||| Sbjct 206053 GGACCGAGTGCCCCTGATGTTGTGGACGGCGAGGCCGATACCGCCG 206008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424928584108776