Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq864 123 3e-23 seq523 104 3e-17 seq391 91.5 2e-13 >seq864 Length=1598700 Score = 123 bits (136), Expect = 3e-23 Identities = 301/455 (66%), Gaps = 27/455 (6%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || || || ||||| || || || |||||||| ||||| ||| | ||||| |||||||| Sbjct 468679 CGTAATTCACTGCTTGTTGCACCGATGCCAACGGCGTCAACGTCCCAGATTTTGGGCAAC 468620 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 || ||| || || || |||||| ||||| | ||| ||| | | | || ||| Sbjct 468619 AATGAGTGCTTTGANCCNTACACGTCCAACTTGTACACTCGCAGAGTGNTNTCCGGAGAG 468560 Query 55604 TTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCG 55663 ||| ||| | |||| ||| | || ||||| || ||||| ||||| ||||||| | Sbjct 468559 TTTTGCATCGTAAACACGCATTTGGTGAAGGATCTNCAGAAACTCAACTTGTGGAACACC 468500 Query 55664 CAGATCAAGA--CGGATATTG--TGCGGAACGGGGGGTCCGTCCAG---AATCTGGAGAT 55716 || |||| ||||| | |||| | ||||| || ||| | | |||||| Sbjct 468499 NCTATGAAGAACCGGATCGTNGCTGCGAA----TGGGTCAGTGCAGCACATTTCGGAGAT 468444 Query 55717 TCC------TCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAG 55770 || | ||||| | | ||| |||||| ||||| || ||||||| Sbjct 468443 CCCCGCGGACATTCGTCT------GCTATACAAGACGGTATGGGAAATCAGTCAGAAGAA 468390 Query 55771 TCTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACAT 55830 | ||||| || ||||| ||||| || | ||| || ||||| ||| |||| || Sbjct 468389 AATCATTGATCTGGCCGCTGACCGTGGCGCCTTCATTGATCAGTCGCAGAGCATGAATAT 468330 Query 55831 CTTCATGGAGAATCCTTCACTG--GCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAG 55888 | |||| | | || | || | ||| | |||||||||||||||||||||||||| Sbjct 468329 CCACATG--GCAGCCCCNAATGTTGGGAAGCTCAGCTCGATGCACTTTTACGGGTGGAAA 468272 Query 55889 AAGGGACTCAAGACGGGTATGTACTATCTGCGGAC 55923 || || || || || ||||||| ||||||| Sbjct 468271 GCAGGTCTGAAAACNGGACTGTACTACTTGCGGAC 468237 >seq523 Length=1527182 Score = 104 bits (114), Expect = 3e-17 Identities = 239/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Plus Query 151965 CACGTATTTCAAAACGGAATTGTC-AGC-CGGATCGAATATCCGTCGAGTCATAGGACTC 152022 || ||| |||||||| | || ||| ||| |||| ||||| ||| || || || | Sbjct 3761 CAGGTACTTCAAAACAGGATCGTCCAGCTCGGA--GAATAGTGCTCGTGTGATGGGTGCC 3818 Query 152023 AAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCA 152082 || ||||||||||| | || || || || || || ||| ||| || |||||| Sbjct 3819 AACTTTGTGAAGATGTACCTAGAAGATGCTGCGTCTTTTCCGCCTTGCAGGCGAGTTCCA 3878 Query 152083 AACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| ||| | || | ||| ||| |||| || ||||| ||||| || | | Sbjct 3879 AACTGACCAGCGGGGACTAGCAAGTTTGCGTTATTGGAACCGACGAAGTTCTGTGCAAGA 3938 Query 152143 TTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATG 152202 ||||| || ||| || | ||| || ||||| ||||| | || || |||| | Sbjct 3939 CCGACAATGGTCGACTGAAGCGACATTTCGCCATGGTGGTACGCGGCATGTTCAGCGACG 3998 Query 152203 TATCCCGCCAACTGCGCCACCTTCATGTCCG---TCGTCAGGTTCTTCTTGAGACAGGCG 152259 || || || | ||| || ||||| || || | ||| || || ||||| || || Sbjct 3999 TACCCAGCGAGCTGAGCAACCTTGATATCTGATCGCGTTAGCTTTCGCTTGAAGCATGCA 4058 Query 152260 TAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 | | ||| ||||| ||||| || ||||| || || || ||| ||||| || || Sbjct 4059 AAGAGCACTTTGCGTTGGGAAGGCTTCAACCCATCAACTACGCTTGGAATAGAGCG 4114 >seq391 Length=1319552 Score = 91.5 bits (100), Expect = 2e-13 Identities = 238/356 (67%), Gaps = 9/356 (3%) Strand=Plus/Minus Query 151965 CACGTATTTCAAAACGGAATTGTC-AGC-CGGATCGAATATCCGTCGAGTCATAGGACTC 152022 || ||| |||||||| | || ||| ||| |||| ||| | | ||| || || || | Sbjct 228582 CAGGTACTTCAAAACAGGATCGTCCAGCTCGGA--GAAAGTGC-TCGTGTGATGGGTGCC 228526 Query 152023 AAACGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCA 152082 || ||||||||||| | || || || || || || ||| ||| || |||||| Sbjct 228525 AACTTTGTGAAGATGTACCTAGAAGATGCTGCGTCTTTTCCGCCTTGCAGGCGAGTTCCA 228466 Query 152083 AACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAA 152142 ||||| |||| ||| | || | ||| ||| |||| || ||||| ||||| || | | Sbjct 228465 AACTGACCAGCGGGGACTAGCAAGTTTGCGTTATTGGAACCGACGAAGTTCTGTGCAAGA 228406 Query 152143 TTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATG 152202 ||||| || ||| || | ||| || ||||| ||||| | || | ||||| Sbjct 228405 CCGACAATGGTCGACTGAAGCGACATTTCGCCATGGTGGTACGCGGCATG-TTCGCGACA 228347 Query 152203 TATCCCGCCAACTGCGCCACCTTCATGTCCG---TCGTCAGGTTCTTCTTGAGACAGGCG 152259 || || || | ||| || ||||| || || | ||| || || ||||| || || Sbjct 228346 TACCCAGCGAGCTGAGCAACCTTGATATCTGATCGCGTTAGCTTTCGCTTGAAGCATGCA 228287 Query 152260 TAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 | | ||| ||||| ||||| || ||||| || || || ||| ||||| || || Sbjct 228286 AAGAGCACTTTGCGTTGGGAAGGCTTCAACCCATCAACTACGCTTGGAATAGAGCG 228231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547208318455400