Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq708 147 2e-30 seq191 140 3e-28 seq263 84.2 2e-11 >seq708 Length=363590 Score = 147 bits (162), Expect = 2e-30 Identities = 414/629 (66%), Gaps = 5/629 (1%) Strand=Plus/Minus Query 29832 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTAT 29891 |||| || ||||| | || |||| ||||| | || ||| || | || | || || Sbjct 200972 TCAGCGTTGGAAACGCTCGAGGCTGTCTCTCAATTTGCTCCTTGAGTGCCTCAATGTGAT 200913 Query 29892 CCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 29951 ||| || || | ||| |||| |||||||| ||||| |||| ||||| || | Sbjct 200912 TGTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGTTTGAGCCCTGTCA 200853 Query 29952 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 30011 | | || || | | || || || || || || || || || |||||||| || | Sbjct 200852 CCTTGGCGATTAGACATGTTAGCAGCGAATAAGATGCTATATTGAACGGTACCCCAAGTC 200793 Query 30012 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACT 30071 ||||||| | || | ||||| | ||||| || ||||| |||| || || |||| Sbjct 200792 CCATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCGACATAGAACT 200733 Query 30072 GACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 30131 | | ||||||||| ||||| ||||| | | | | |||||||| || Sbjct 200732 GGGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACACGGGTTCCAAGCTG 200673 Query 30132 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 30191 | | ||| || |||||||| | |||||| || || || | | | || || Sbjct 200672 AAATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTTAATCACATCAGTCAACT 200613 Query 30192 GATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACTCTGCTCCGAAATGC 30250 ||||| |||| ||| |||||| ||| || | || || ||||| || || || || Sbjct 200612 GATCCTTCCCCGCCCCTCTGTAGTC-GCCATCCTTGTTTGTATACTCCGCGCCAAAGTGT 200554 Query 30251 CTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 30310 | ||| || || || ||||| || || |||||||||||||||| | || || |||| Sbjct 200553 CGCCATTGAAATCCATACACAGGACCAAGGTCTCCCTCTTCCC-GATCTGTAAACCCCGA 200495 Query 30311 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGC 30370 |||||||||| | | || || || | ||||| || ||||||||||| | ||| Sbjct 200494 GAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCTGTCAGC 200435 Query 30371 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 30430 ||||| | ||| || | | ||||| | ||||||||| | || || |||| Sbjct 200434 AGTTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAAC-ACCCGCCAA 200376 Query 30431 AAGACCCTCTTGGTCGTGAGGAG-GGGAA 30458 || || | |||||||||||| || ||||| Sbjct 200375 AACACTCGCTTGGTCGTGAGAAGCGGGAA 200347 >seq191 Length=259989 Score = 140 bits (154), Expect = 3e-28 Identities = 410/628 (65%), Gaps = 3/628 (0%) Strand=Plus/Plus Query 29833 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATC 29892 ||| || ||||| | || |||| ||||| | || ||| || | || | || || Sbjct 120558 CAGCGTTGGAAAAGCTCGAGGCTGTCTCTCAATTTGCTCCTTGAGTGCCTCAATGTGATT 120617 Query 29893 CAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 29952 ||| || || | ||| |||| |||||||| ||||| || | ||||| || || Sbjct 120618 GTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGGTTGAGCCCTGTCAC 120677 Query 29953 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 30012 | || || | | || || || || || || || || || |||||||| || || Sbjct 120678 CTTGGCGATTAGACATGTTAGCAGGGAATAAGATGCTATATTGAACGGTACCCCAAGTCC 120737 Query 30013 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTG 30072 |||||| | || | ||||| | ||||| || ||||| |||| || || ||||| Sbjct 120738 CATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCGACATAGAACTG 120797 Query 30073 ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30132 | ||||||||| ||||| ||||| | | | | |||||||| || | Sbjct 120798 GGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACACGGGTTCCAAGCTGA 120857 Query 30133 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30192 | ||| || |||||||| | |||||| || || ||| | | | || ||| Sbjct 120858 AATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTCAATTACATCAGTCAACTG 120917 Query 30193 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT-GTCCGTGTACTCTGCTCCGAAATGCC 30251 |||| |||| ||| |||||| || || | || || ||||| || || || || | Sbjct 120918 ATCCTTCCCCGCCCCTCTGTAGTC-GCAATCCTTGTTTGTATACTCCGCGCCAAAGTGTC 120976 Query 30252 TCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 30311 ||| || || || ||||| || || |||||||||||||||| | || |||| Sbjct 120977 GCCATTGAAATCCATACACGGGACCAAGGTCTCCCTCTTCCCGATCTGTAAACCCCCGAG 121036 Query 30312 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCT 30371 |||||||||| | | || || || | ||||| || ||||||||||| | ||| Sbjct 121037 AGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCTGTCAGCA 121096 Query 30372 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 30431 ||||| | ||| || | | ||||| | ||||||||| | || || ||||| Sbjct 121097 ATTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAACACCCCGCCAAA 121156 Query 30432 AGACCCTCTTGGTCGTGAGGAG-GGGAA 30458 | || | |||||||||||| || ||||| Sbjct 121157 ACACTCGCTTGGTCGTGAGAAGCGGGAA 121184 >seq263 Length=70425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 29903 TGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29962 || || || || || |||||||||||||||| | | ||||| | || | |||||| Sbjct 36014 TGCGCATCGCCAAGTGTGTGGACAAACTCTCCGAGCTGCAGCCCTGCTGCGCGTGCCATC 35955 Query 29963 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCC 30022 ||| ||||| | || ||| ||| || || || ||||| ||||| | || | Sbjct 35954 ATGAGTGTGAGCAAAGCGTAAGAGGCAATATTGAACGGTACGCCGAGAAAGACATCGGCT 35895 Query 30023 GACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCG 30082 || || || |||||||| || ||||||| ||||||| |||| |||||| | | | Sbjct 35894 GATCTTTGATAGAGCTGGCAAGAGAGCTTTCCGTCGAGCACGGCAAACTGGAAGAGGCAA 35835 Query 30083 TGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30138 ||||| || || | ||||| || | ||| |||||||| || | ||||| Sbjct 35834 TGGCAAGGCGGCAATGCCATATCGCTGACATCTGCCGGGTTCCATGCCGAGACGAT 35779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406304839007316