Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq475 132 3e-26 seq99 116 2e-21 seq492 107 1e-18 seq557 91.5 9e-14 >seq475 Length=1546706 Score = 132 bits (146), Expect = 3e-26 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| || ||||||||| ||||||||||| || | ||||| Sbjct 934403 AGACGGAGCACCAAATGGAGGGTTGACTCCTTTTGGATGTTATAATCCGACAAGGTTCGG 934462 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||| || | ||| || |||||||| || | ||||||||||||| | || | |||||| Sbjct 934463 TCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCC 934522 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT---AAAATTGTGTCTTCGCTCTCCACTTCCACG 34665 |||||| |||| |||| || || | || |||| | || | || || || | | Sbjct 934523 TTGTCTTGGATC-TTTGACTTGACATTTGCAACGTTGT-CCGACGAT-TCTACCTCAAGG 934579 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || ||||||| || || || |||||||||||| || Sbjct 934580 GTGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTG 934624 >seq99 Length=379092 Score = 116 bits (128), Expect = 2e-21 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||||||| || ||||||| || |||| ||||| ||| ||||| Sbjct 173867 AGACGGAGCACCAAATGGAGGGTTGACTCCTTTGGA-TGTTGTAATCGACAAG-GTTCGG 173924 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||| || | ||| || |||||||| || | ||||||||||||| | || | |||||| Sbjct 173925 TCGTCCTCCAATTGCTTTCCGGCAAAAATCAGACGCTGTTGGTCCTGAGGAATGCCCTCC 173984 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCACTTCCACGG 34666 |||||| |||| |||| || || | | ||| | | || | || || || | || Sbjct 173985 TTGTCTTGGATC-TTTGACTTGACATTTGCAATGT-TGTCCGATGATTCTACCTCAAGGG 174042 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 | || || || ||||||| || || || |||||||||||| || Sbjct 174043 TGATGGTCTTCCCGGTTAGAGTCTTGACGAAAATCTGCATGGTG 174086 >seq492 Length=1085467 Score = 107 bits (118), Expect = 1e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAAT--CTG 34537 || |||| |||||||||||||| ||| | || ||| || |||||||| || | || Sbjct 147826 CCACCTCGAAGACGCAACACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147885 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||| || || |||| ||||| || || || || || || | |||||| || || || | Sbjct 147886 AAA--GTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAAATCAGACGCTGCTGATCGGGAG 147943 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| ||| || || ||||| | |||||||| | ||| Sbjct 147944 GAATACCCTCCTTGTC-CTGAATCTTCGTCTTAACATTCTCGATTGTGTCCGAGGACTCA 148002 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||| | || ||||| || || || || || |||||||||||||||||| Sbjct 148003 ACTTCAAGCGTAATCGTCTTTCCTGTCAAAGTCTTCACAAAAATCTGCATG 148053 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | ||||| | ||| | || ||||| |||||| || ||||| ||||| Sbjct 146914 CCGCCGCGCAGACGGAGCACAAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 146973 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| || || || || || || | |||||| ||||| ||||| Sbjct 146974 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCGGA 147033 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || || || || | ||| ||||| |||||| Sbjct 147034 ATACCCTCCTTGTCCTGGATC-TTGGTCTTCACATTTTCAATGGTGTCCGACGACTCCAC 147092 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || ||||| ||||| || | ||| ||||||||||||||||| Sbjct 147093 CTCAAGCGTAATCGTCTTACCCGTAAGCGTCTTCACAAAAATCTGCAT 147140 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||| ||||| ||| | || ||| || || ||||| || || Sbjct 147598 CCACCCCGAAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTC 147657 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || |||| ||||| || || || || || || | |||||| ||||| || || Sbjct 147658 AAGGTACGTCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 147717 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | |||||||||||| |||| || || || ||| | | || || | || | ||| | Sbjct 147718 ATTCCCTCCTTGTCCTGGATC-TTAGTCTTCACGTTCTCAATG-GTATCCGATGACTCAA 147775 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || |||||||| || || || || ||||||||||||||||| Sbjct 147776 CTTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || |||| ||||| ||| | || ||| || |||||||| || || Sbjct 147370 CCGCCCCGGAGGCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTC 147429 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| || || || || || || | |||||| ||||| || || Sbjct 147430 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147489 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | |||||||||||| ||| || || || ||| | | || || | || | ||| | Sbjct 147490 ATTCCCTCCTTGTC-CTGAATCTTAGTCTTCACGTTCTCAATG-GTATCCGATGACTCAA 147547 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | ||||| ||||| || || || || ||||||||||||||||| Sbjct 147548 CTTCAAGCGTTATAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | |||||| || || || ||| || || ||||| || || Sbjct 147142 CCGCCCCGGAGGCGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTC 147201 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || ||||| || || || || || || | |||||| ||||| || || Sbjct 147202 AAGGTACGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGA 147261 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCT--CTCCA 34657 | |||||||||||| ||| ||| || || || || | || | || | ||| | Sbjct 147262 ATTCCCTCCTTGTC-CTGAATTTTCGTCTTCAC-ATTCTCTATCGTATCCGATGACTCAA 147319 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| | || |||||||| || || || || ||||||||||||||||| Sbjct 147320 CTTCAAGCGTAATCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 >seq557 Length=252103 Score = 91.5 bits (100), Expect = 9e-14 Identities = 164/232 (71%), Gaps = 11/232 (5%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TG 34537 ||||| | ||||| | ||| | ||| ||||| |||||| || ||||| ||||| | Sbjct 156559 CCGCCGCGCAGACGGAGCACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAATCGCTC 156500 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 ||||| || | || ||||| || || || || || || | |||||| ||||| |||| Sbjct 156499 AAAGTA--CGACCATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGCG 156442 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCT--CT 34654 | | ||||||||||| |||| || || || || | ||| ||||| || | || Sbjct 156441 GAATACCCTCCTTGTCCTGGATC-TTGGTCTTCACATTTTCAATCGTGTC--CGATGACT 156385 Query 34655 CCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| | || || || || || || ||||| || || ||||||||||| Sbjct 156384 CAACTTCAAGCGTAATAGTCTT-CCAGTCAACGTCTTAACGAAAATCTGCAT 156334 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | |||| || || ||| ||| || |||||||| || || | ||||| | Sbjct 155868 AGACGGAGGACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTA--C 155811 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | |||| ||||| || || ||||| || || | |||||| || || || || | |||| Sbjct 155810 GACCGTCCTCAAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCT 155751 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCA 34663 ||||||| |||| || || || || | ||| || || || | ||| ||||| | Sbjct 155750 CCTTGTCCTGGATC-TTAGTCTTCACATTCTCAATCGTATC--CGATGACTCAACTTCAA 155694 Query 34664 CGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || || ||||| |||||||||||||||||| Sbjct 155693 GCGTAATAGTCTTTCCAGTCAACGTCTTCACAAAAATCTGCATG 155650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATC--TGAAAGTGTTC 34546 ||||| | |||| || || ||| |||||| |||||||| || || | ||||| | Sbjct 155185 AGACGGAGGACCAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAAGTA--C 155128 Query 34547 GCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCT 34606 | |||| ||||| || || ||||| || || | ||||| || ||||| | | || | Sbjct 155127 GACCGTCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCCGGGG--ATGCCTT 155070 Query 34607 CCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACG 34665 ||||||| ||||| || || || | ||| ||||| | |||||| || | | Sbjct 155069 CCTTGTCCTGAATCTTC-GTCTTCACATTCTCAATAGTGTCCGAGGACTCCACCTCAAGG 155011 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || ||||| || |||||||| |||||||||||| Sbjct 155010 GTAATAGTCTTTCCGGTCAAAGTTTTCACGAAAATCTGCATG 154969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725292433659