Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq475 138 1e-27 seq99 136 3e-27 seq557 131 1e-25 seq492 122 8e-23 >seq475 Length=1546706 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || ||||| ||||| ||| | || || ||||| || ||| ||| Sbjct 934622 CCATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCGT 934563 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| ||| | ||||| ||| || |||||||| || ||||| || | || | Sbjct 934562 CGGACAACGTTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGACC 934503 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTAC 27164 |||||||| | || | ||||| || |||||||| ||| | ||| | || || ||||| Sbjct 934502 AACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGAC-GACCGAACCTTGTCGGATTAT 934444 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| ||| | |||||||| | ||| |||| || || Sbjct 934443 AACATCCAAAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 934394 >seq99 Length=379092 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || ||||| ||||| ||| | || || ||||| || ||| | | Sbjct 174084 CCATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCAT 174025 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| | ||||| ||| || |||||||| || ||||| || | || | Sbjct 174024 CGGACAACATTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGACC 173965 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 |||||||| | || | ||||| || |||||||| ||| | ||| | || |||||||| Sbjct 173964 AACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGAC-GACCGAACCTTGTCGATTACA 173906 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || ||||||||| ||| | |||||||| | ||| |||| || || Sbjct 173905 ACA-TCCAAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 173858 >seq557 Length=252103 Score = 131 bits (144), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || |||||| ||||||| ||| ||||||| ||||| ||||| | || Sbjct 154969 CATGCAGATTTTCGTGAAAACTTTGACCGGAAAGACTATTACCCTTGAGGTGGAGTCCTC 155028 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| || || || ||||| ||||| |||||||| || | ||||| Sbjct 155029 GGACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCC--CGGATCA 155086 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || | || ||| || || | || ||||| Sbjct 155087 GCAGCGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAA 155146 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| |||||||| ||| | || |||| | ||| | || || ||||| Sbjct 155147 CATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGCAT 155197 Score = 125 bits (138), Expect = 6e-24 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| ||||| || || || || ||||| | || || || || || || | Sbjct 154741 GCCATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCC 154800 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| ||||||||| ||||| ||||| || ||||| |||||||| | ||||| Sbjct 154801 TCAGACACGATTGAGAACGTCAAGACCAAAATCCAGGACAAGGAAGGCAT--CCCCCGAC 154858 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || |||||| | || | ||| ||||| || | || ||| | ||| | || ||| Sbjct 154859 CAGCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCACCTTGAGTGACTAC 154918 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||| |||||||| ||| | || ||||| | ||| | || |||||||| Sbjct 154919 AACATTCAGAAGGAGTCCACCCTTCACTTGGTCCTCCGTCTCCGAGGTGGCAT 154971 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| || ||| ||||||| |||||||| || | || Sbjct 155650 CATGCAGATTTTTGTGAAGACGTTGACTGGAAAGACTATTACGCTTGAAGTTGAGTCATC 155709 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || ||||||||| || || || || || ||||| || || || || |||||||| Sbjct 155710 GGATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCA 155769 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||||||||| || | || ||| || || | || ||||| Sbjct 155770 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAA 155829 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| ||| | || |||| | ||| | || || ||||| Sbjct 155830 CATTCAGAAAGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGCAT 155880 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| |||||||||||||||| || | || Sbjct 155423 ATGCAGATTTTCGTGAAGACATTGACTGGAAAGACTATTACTCTTGAAGTTGAGTCATCG 155482 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| || || || || || ||||| || || || || |||||||| Sbjct 155483 GATACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAG 155542 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||||||| || | || ||| || || | || |||||| Sbjct 155543 CAGCGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAAC 155602 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| ||| | || |||| | ||| | || || ||||| Sbjct 155603 ATTCAGAAAGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGCAT 155652 Score = 111 bits (122), Expect = 1e-19 Identities = 166/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || ||| ||||||| ||| | ||||| ||||| || || | || Sbjct 155195 CATGCAGATTTTCGTGAAGACTTTGACCGGAAAGACGATTACCCTTGAGGTTGAGTCCTC 155254 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || ||||| ||||| || || || || || ||||| Sbjct 155255 -GACACTATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTAT-CCTCCGGATCA 155312 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACA 27165 |||||| | || | ||| || || || | || ||| || || ||| | ||| |||| Sbjct 155313 GCAGCGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGTCCGTACCTTGAGCGACTACA 155372 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| ||| | || |||| | ||| | || ||||| || Sbjct 155373 ACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGCGGTGGTAT 155424 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| ||||||| |||||||| || | || Sbjct 156334 ATGCAGATTTTCGTTAAGACGTTGACTGG-AAGACTATTACGCTTGAAGTTGAGTCATCG 156392 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || || || || ||||| || || || || ||||| || Sbjct 156393 GACACGATTGAAAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 156452 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || || || | |||||||||| Sbjct 156453 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACTTTGAGCGATTACAAC 156512 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | ||| | || | ||| |||| || || || Sbjct 156513 ATCCAGAAGGAGTCTACTCTTCATCTTGTGCTCCGTCTGCGCGGCGGTAT 156562 >seq492 Length=1085467 Score = 122 bits (134), Expect = 8e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 26985 GCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCG 27044 ||||||||||| ||||| || || || || ||||| | || || || || || || | Sbjct 148739 GCCATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCC 148680 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 || ||| ||||||||| ||||| ||||| || ||||| |||||||| || || || Sbjct 148679 TCGGACACGATTGAGAACGTCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGAC 148620 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTA 27163 || |||||| | || | ||| ||||| || | || ||| | || |||| || || Sbjct 148619 CAGCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGAC-GGACGCACGTTGAGTGACTA 148561 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||| |||||||| ||| | || |||| | ||| | || |||||||| Sbjct 148560 CAACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGAGGTGGCAT 148507 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || ||| |||| || ||| | ||||| |||||||| || | || Sbjct 148053 CATGCAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTC 147994 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | || |||| || || || ||||| ||||| || || || || |||||||| Sbjct 147993 GGACACAATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCA 147934 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | ||| || || || | || ||| | || | || ||||| Sbjct 147933 GCAGCGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAA 147874 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||| || || ||| |||| |||||| | || ||||| || Sbjct 147873 CATTCAGAAAGAGTCTACATTGCATCTGGTGTTGCGTCTTCGAGGTGGTAT 147823 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || || || || || | || Sbjct 148509 CATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTC 148450 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 148449 GGACACGATTGAGAACGTCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148390 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC-GATTACA 27165 |||||| | || | ||| ||||| || | || ||| | || |||| || |||| Sbjct 148389 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGA-CGCACGTTGAGTGACTACA 148331 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| ||| | || |||| | ||| | || |||||||| Sbjct 148330 ACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGAGGTGGCAT 148279 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || || ||||| | || || || || || || | || Sbjct 148281 CATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTC 148222 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||||| ||||| ||||| || ||||| |||||||| || || || || Sbjct 148221 GGACACGATTGAGAACGTCAAGACCAAAATCCAGGACAAGGAAGGCATCCCCCCGGACCA 148162 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCC-GATTACA 27165 |||||| | || | ||| ||||| || | || ||| | || |||| || |||| Sbjct 148161 GCAGCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGA-CGCACGTTGAGTGACTACA 148103 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||| |||||||| ||| | || |||| | ||| | || || ||||| Sbjct 148102 ACATTCAGAAGGAGTCCACCCTTCACCTGGTCCTCCGTCTCCGTGGAGGCAT 148051 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || || ||| | ||||| ||||| ||||| |||| Sbjct 147140 ATGCAGATTTTTGTGAAGACGCTTACGGGTAAGACGATTACGCTTGAGGTGGAGTCGTCG 147081 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || || || || ||||| || Sbjct 147080 GACACCATTGAAAATGTGAAGACCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 147021 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || || ||| | |||||||||| Sbjct 147020 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACCTTGAGCGATTACAAC 146961 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| || | || | || | ||| |||| || || || Sbjct 146960 ATCCAGAAGGAGTCTACTCTTCACCTTGTGCTCCGTCTGCGCGGCGGTAT 146911 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| || || |||| || |||||||| || | || Sbjct 147596 ATGCAGATTTTTGTGAAGACATTGACTGGAAAAACTATAACGCTTGAAGTTGAGTCATCG 147537 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || ||||| ||||| || || || || ||||| || Sbjct 147536 GATACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAG 147477 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| ||||| || | || || || ||| | || |||||| Sbjct 147476 CAGCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTACCTTGAGTGACTACAAC 147417 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || || ||| |||| |||| | ||||| || || Sbjct 147416 ATTCAGAAAGAGTCTACATTGCATCTGGTGCTGCGCCTCCGGGGCGGTAT 147367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434912294832960