Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq374 82.4 4e-11 seq360 82.4 4e-11 seq347 82.4 4e-11 seq331 82.4 4e-11 seq265 82.4 4e-11 seq262 82.4 4e-11 seq239 82.4 4e-11 >seq374 Length=37716 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 14313 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 14372 >seq360 Length=28839 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 27955 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 28014 >seq347 Length=42671 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 11298 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 11239 >seq331 Length=49663 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 46555 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 46614 >seq265 Length=48727 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 27494 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 27435 >seq262 Length=94814 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 70238 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 70297 >seq239 Length=192504 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62881 TAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTGCT 62940 |||| ||| ||||||| ||||| ||||||||||| ||| ||||||||||||||||||||| Sbjct 120106 TAGCGCAGTTTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGCAGGTTCAAATCCTGCT 120165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243939061267096