Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_028906.1 Length=75933 Score E Sequences producing significant alignments: (Bits) Value seq160 210 1e-49 >seq160 Length=568654 Score = 210 bits (232), Expect = 1e-49 Identities = 468/696 (67%), Gaps = 15/696 (2%) Strand=Plus/Minus Query 66467 ATTCCCACCGGCTCTATCGCTCTGGACGGCGCCCTGGGCATCGGGGGGTACCCGAGGGGC 66526 ||| ||||||| ||||||| ||| |||| |||||| || |||| ||| ||| |||| Sbjct 244256 ATTTCCACCGGGTCTATCGGTCTAGACGTCGCCCTTGGAGTCGGAGGGATCCCTCGGGGA 244197 Query 66527 CGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCG 66586 || || || || ||||| ||||||||||| || || | || ||| ||||||||| Sbjct 244196 CGTGTCGTCGAGATCTATGGCCCAGAATCCAGCGGTAAAACCACCCTGACGCTCCACGCG 244137 Query 66587 GTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTG 66646 || || | ||||| ||| ||| || | |||||| | | |||||||||| ||| | || Sbjct 244136 GTAGCTGAGGCGCAAAAGAGCGGCGGGATCGCCGCATTCGTCGACGCTGAACACGCTCTC 244077 Query 66647 GACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTCAGCCC 66706 || | |||||| | |||||| || | ||| | ||| || | ||||| Sbjct 244076 GATGTGGCCTACGCCCGGAAGCTCGGGGTTCGCACCGATGATCTCTTGATCTCGCAGCCG 244017 Query 66707 GATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGCTGTCC 66766 |||||||| ||||| || || || |||| || | | || || || | | Sbjct 244016 GATACCGGGGAGCAAGCGCTTGAAATCGCAGAGATGTTGGTGCGTTCCAACGCGATCGAT 243957 Query 66767 ATCGTCGTCGTTGACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCGACATC 66826 || | || ||||| || ||||| || || |||||| | || ||| ||||||| || || Sbjct 243956 ATTCTTGTGGTTGATTCGGTGGCTGCGCTTGTGCCGAGAGCTGAGATCGAAGGGGAAATG 243897 Query 66827 GGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGCAAGCTCACT 66886 || ||| ||||||||| |||| || || | ||| || || | || || | || Sbjct 243896 GGCGACTCCCACGTCGGCTTGCAGGCTCGATTGATGAGCCAAGCGCTCCGAAAATTAACG 243837 Query 66887 GGCACCATCTCCAGCACCAACACGCTG-ACGCTCTGGGTCAACCAGTTGCGCGAGAAGAT 66945 || | || | | | | || ||| | ||| |||||||| | || |||||| Sbjct 243836 GGTATTATTGCGAAGAGCCGGAC-CTGTGTGGTCTTTATCAACCAGATCCGATTGAAGAT 243778 Query 66946 CGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACGGGCGGAAAGGCTTTGAGGT 67001 ||| |||| | ||| |||||| || || ||||| || || || | | || Sbjct 243777 CGG---CGTGATGTTCGGCAGCCCCGAA----ACGACTACGGGTGGCAACGCACTTAAGT 243725 Query 67002 TCTACGCCTCAGTCCGTATGGATGTCCGTCGCATCGCCACCGA-GAAGGAAGGCGATGAG 67060 | || ||| | |||||||| | ||||| |||| | ||| ||||| ||||| || Sbjct 243724 TTTATAGCTCGATTCGTATGGACATTCGTCGTATCG-GAGCGATCAAGGACAGCGATAAG 243666 Query 67061 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 67120 | || || || || |||||||| ||||| |||||||||||| ||||||||||| |||| Sbjct 243665 GTCGTGGGTAATCGAACCCGGGTTAAGGTGGTCAAGAACAAGTTGGCCCCGCCGTTCCGC 243606 Query 67121 AATGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATC 67156 | |||||| || ||||||| || |||||| Sbjct 243605 GAGCATGAGTTCGATATCATGTACGGCGAAGGCATC 243570 Score = 93.3 bits (102), Expect = 2e-14 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 66701 CAGCCCGATACCGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAG 66760 ||||| ||| |||||||||||| ||||| || || || |||| ||| || || || Sbjct 395860 CAGCCGGATCACGGCGAGCAGGCTCTGGAAATTGTCGAGATCCTGGTCCGATCGGG-GA- 395803 Query 66761 CTGTCCATCGTCGTCGTT---GACTCCGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAA 66817 | || || ||| ||||| || || ||||| ||| ||||||| || |||||||||||| Sbjct 395802 CAATCGAT-GTCCTCGTTCTGGATTCAGTGGCTGCCTTGGTGCCCCGTGCCGAGCTCGAA 395744 Query 66818 GGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCACAGGCCATGCGC 66877 || || || || || ||| | || |||| || || || ||| || |||||||| Sbjct 395743 GGAGAAATGGGCGAGGCTCATATGGGTTTGCAAGCCCGTCTTATGAGCCAAGCCATGCGA 395684 Query 66878 AAGCTCACTGG 66888 || ||||| || Sbjct 395683 AAACTCACCGG 395673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242857476070482