Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq475 98.7 7e-16 seq99 89.7 4e-13 >seq475 Length=1546706 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || ||||| || ||||| || || |||| || ||| | Sbjct 934620 ATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCGTCG 934561 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | || | ||||| ||| || ||||| || || |||| ||| || Sbjct 934560 GACAACGTTGCAAATGTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGACCAA 934501 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || | |||||||||||||| |||||||| ||||| || | |||||| ||||| ||| Sbjct 934500 CAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGACGACCGAACCTTGTCGGATTATAAC 934441 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||| || | |||||||| | ||| |||| || || Sbjct 934440 ATCCAAAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 934394 >seq99 Length=379092 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| || || ||||| || ||||| || || |||| || ||| | Sbjct 174082 ATGCAGATTTTCGTCAAGACTCTAACCGGGAAGACCATCACCCTTGAGGTAGAATCATCG 174023 Query 27850 GACGA---TGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| ||||| ||| || ||||| || || |||| ||| Sbjct 174022 GACAACATTGCA-AAT--GTCAAGTCAAAGATCCAAGACAAGGAGGGCATTCCTCAGGAC 173966 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || | |||||||||||||| |||||||| ||||| || | ||||| ||||||| Sbjct 173965 CAACAGCGTCTGATTTTTGCCGGAAAGCAATTGGAGGACGACCGAACCTTGT-CGATTAC 173907 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||| ||| || | |||||||| | ||| |||| || || Sbjct 173906 AACATCC-AAAGGAGTCAACCCTCCATTTGGTGCTCCGTCTGCGCGGAGG 173858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355857529467021