Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq557 104 2e-17 seq492 98.7 9e-16 >seq557 Length=252103 Score = 104 bits (114), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||| || || || || || || |||| || ||| |||| || Sbjct 154950 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCACTCAAG-GTGCGTCCGTCCTC 154892 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| ||||| || || |||||||||||||||||| ||| | || || |||||| Sbjct 154891 AAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCG--GGGGATGCCTTCCTTGTCCTG 154834 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| |||| || | | ||| || ||||| || || | ||||| |||| Sbjct 154833 GATTTTGGTCTTGACGTTCTCAATCGTGTCTGAGGACTCGACCTCGAGTGTGATTGTTTT 154774 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || |||||||| ||||| Sbjct 154773 GCCCGTGAGGGTCTTCACAAAGATCTGCAT 154744 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| |||||| || || || || || | || || |||| ||| Sbjct 155859 ACCAGGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCACTCAAAGTACGACCGTCCTCA 155800 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || || ||||||||||| |||| || | | ||| |||||| | Sbjct 155799 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCGGGAGGAATACCCTCCTTGTCCTGG 155740 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | |||||| ||||| || || | ||| ||| | ||| Sbjct 155739 ATCTTAGTCTTCACATTCTCAATCGTATCCGATGACTCAACTTCAAGCGTAATAGTCTTT 155680 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||| || ||||| || ||||| Sbjct 155679 CCAGTCAACGTCTTCACAAAAATCTGCAT 155651 >seq492 Length=1085467 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACG 39180 || ||| |||| |||||||| ||||| || || ||||||||||||||||| | ||| | | Sbjct 148117 GTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATG 148176 Query 39181 CTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCC 39240 | || |||||| |||||| |||| || | | ||| || ||||| || || Sbjct 148177 CCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCG 148236 Query 39241 ACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| ||||| || || || |||||||| ||||| Sbjct 148237 AGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148280 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACG 39180 || ||| |||| |||||||| ||||| || || ||||||||||||||||| | ||| | | Sbjct 148345 GTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATG 148404 Query 39181 CTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCC 39240 | || |||||| |||||| |||| || | | ||| || ||||| || || Sbjct 148405 CCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCG 148464 Query 39241 ACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| ||||| || || || |||||||| ||||| Sbjct 148465 AGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148508 Score = 98.7 bits (108), Expect = 9e-16 Identities = 120/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 39121 GTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACG 39180 || ||| |||| |||||||| ||||| || || ||||||||||||||||| | ||| | | Sbjct 148573 GTGCGTCCGTCCTCAAGCTGCTTGCCTGCGAAGATAAGACGCTGCTGGTCCGGGGGGATG 148632 Query 39181 CTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCC 39240 | || |||||| |||||| |||| || | | ||| || ||||| || || Sbjct 148633 CCTTCCTTGTCCTGGATTTTGGTCTTGACGTTCTCAATCGTGTCCGAGGACTCGACCTCG 148692 Query 39241 ACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| |||| ||||| || || || |||||||| ||||| Sbjct 148693 AGTGTGATTGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 148736 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTT 39127 ||| | |||||| || || || |||||| || || || || ||| |||| || || Sbjct 147153 GCGAAGCACCAAGTGCAGTGTAGACTCTTTCTGGATGTTGTAGTCGCTCAAG-GTACGAC 147211 Query 39128 CGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTT 39187 | || |||||||| ||||| || || || |||||||||||||||| || | | ||| | Sbjct 147212 CATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCT 147271 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| |||||| || | || | | |||||| ||||| || || | ||| | Sbjct 147272 TGTCCTGAATTTTCGTCTTCACATTCTCTATCGTATCCGATGACTCAACTTCAAGCGTAA 147331 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| |||| || || ||||| || ||||| Sbjct 147332 TCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147368 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTT 39127 ||| | ||||| ||| | || |||||| || || || || || |||| || || Sbjct 147381 GCGCAGCACCAGATGCAATGTAGACTCTTTCTGAATGTTGTAGTCACTCAAG-GTACGAC 147439 Query 39128 CGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTT 39187 | || |||||||| ||||| || || || |||||||||||||||| || | | ||| | Sbjct 147440 CATCCTCAAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCGGGAGGAATTCCCTCCT 147499 Query 39188 TGTCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||||| ||| | | || || | || | | ||||| ||||| || || | ||| Sbjct 147500 TGTCC-TGAATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTT 147558 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| ||||||| |||| || || ||||| || ||||| Sbjct 147559 ATAGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147596 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGG-CAAGTGTTCGTT 39127 ||| | ||||| ||| | || |||||| || || || || || |||| || ||| Sbjct 147609 GCGCAGCACCAGATGCAATGTAGACTCTTTCTGGATGTTGTAGTCACTCAAG-GTACGTC 147667 Query 39128 CGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTT 39187 |||| |||||||| || || || || || |||||||||||||||| || | | ||| | Sbjct 147668 CGTCCTCAAGCTGCTTCCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATTCCCTCCT 147727 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 ||||| ||| || || | || | | ||||| ||||| || || | ||| | Sbjct 147728 TGTCCTGGATCTTAGTCTTCACGTTCTCAATGGTATCCGATGACTCAACTTCAAGCGTAA 147787 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||||| |||| || || ||||| || ||||| Sbjct 147788 TCGTTTTTCCAGTCAATGTCTTCACAAAAATCTGCAT 147824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429539720997299