Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq263 100 2e-16 seq708 84.2 2e-11 seq191 82.4 6e-11 >seq263 Length=70425 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29675 TGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATC 29734 || ||||| || || ||||||||||||||||| | | ||||| | || | |||||| Sbjct 36014 TGCGCATCGCCAAGTGTGTGGACAAACTCTCCGAGCTGCAGCCCTGCTGCGCGTGCCATC 35955 Query 29735 ATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCT 29794 ||| ||||| | || ||| ||| || || || || || ||||| | || || Sbjct 35954 ATGAGTGTGAGCAAAGCGTAAGAGGCAATATTGAACGGTACGCCGAGAAAGACATCGGCT 35895 Query 29795 GACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCA 29854 || || || ||||||||||| ||||||| ||||||| |||| |||||| | | | | Sbjct 35894 GATCTTTGATAGAGCTGGCAAGAGAGCTTTCCGTCGAGCACGGCAAACTGGAAGAGGCAA 35835 Query 29855 TGGCACGGAGGAAGGGCCAT 29874 ||||| || || | ||||| Sbjct 35834 TGGCAAGGCGGCAATGCCAT 35815 >seq708 Length=363590 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||| || || || ||||| || || |||||||||||||||| | || || Sbjct 200559 AAGTGTCGCCATTGAAATCCATACACAGGACCAAGGTCTCCCTCTTCCC-GATCTGTAAA 200501 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 |||| |||||||||| | | || || || | ||||| || ||||||||||| Sbjct 200500 CCCCGAGAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCT 200441 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 | ||| ||||| | ||| || | | ||||| | ||||||||| | || || Sbjct 200440 GTCAGCAGTTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAAC-ACC 200382 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30230 |||||| || | |||||||||||| || ||||| Sbjct 200381 CGCCAAAACACTCGCTTGGTCGTGAGAAGCGGGAA 200347 >seq191 Length=259989 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/215 (69%), Gaps = 1/215 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || || | ||| || || || ||||| || || |||||||||||||||| | || Sbjct 120970 AAGTGTCGCCATTGAAATCCATACACGGGACCAAGGTCTCCCTCTTCCCGATCTGTAAAC 121029 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 |||| |||||||||| | | || || || | ||||| || ||||||||||| Sbjct 121030 CCCCGAGAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCT 121089 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 | ||| ||||| | ||| || | | ||||| | ||||||||| | || || Sbjct 121090 GTCAGCAATTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAACACCC 121149 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAG-GGGAA 30230 |||||| || | |||||||||||| || ||||| Sbjct 121150 CGCCAAAACACTCGCTTGGTCGTGAGAAGCGGGAA 121184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406157641021978