Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq489 96.9 3e-15 seq28 95.1 1e-14 >seq489 Length=1032923 Score = 96.9 bits (106), Expect = 3e-15 Identities = 290/439 (66%), Gaps = 9/439 (2%) Strand=Plus/Minus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||| ||||||||||| || || || | |||| |||||| ||||||||| Sbjct 355098 AAACAAGCATGCTCACAATGCAATCCCTCATCACGTGAGATCAATTCGTTCGAAAACGTT 355039 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| | ||| || || | || || | | || || || ||| ||||| || ||| Sbjct 355038 AATCCAGACATCAACCCGCGTTTCTTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAG 354979 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG-TC 4723 || || || || || || |||||||| || |||| | ||| | |||| || || Sbjct 354978 AAAATCCCCTCCACAGCTGCAAACGCCACCAATC--GCTCCGCA-AAGCT-ACTCTGCGA 354923 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||||| | ||||| | ||||| | ||||| ||||| | || || Sbjct 354922 TCCAATCCATCGAATCGCCCATTCCGCTTTGCGAGTCACGCAGGGAATCTCCTCGATCGC 354863 Query 4784 GTTAAATAATTTACTTTTTTCA-AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || | | || ||| || | |||| ||||| || || | || || || Sbjct 354862 TCTGAAAAGCCGATCCTTCTCAGTATTGTCCTTG-ATATACGTATCCAACAGCAGCGAAT 354804 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 || |||| || || | ||| || || || ||| || || |||| ||||| || || | Sbjct 354803 ACGTTTCCGAGTGCACATTCTCCATCGCCGCCTGGAA--CGCAAAAACATCTGGCCTCCG 354746 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | || || |||||||||||||| ||||| |||||||| ||| || || || | Sbjct 354745 GCAACTGTACGTCGTTACAAAATCTCTCTACCAAGTTTTCCAGTACAATTCCATCCGACG 354686 Query 4963 CTGCAAAAAACGCCAAAAC 4981 | ||||| || ||||| || Sbjct 354685 CCGCAAAGAAGGCCAACAC 354667 >seq28 Length=612614 Score = 95.1 bits (104), Expect = 1e-14 Identities = 289/439 (66%), Gaps = 7/439 (2%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||| ||||||||||| || || || | |||| |||||| ||||||||| Sbjct 279201 AAACAAGCATGTTCACAATGCAATCCCTCATCACGTGAGATCAATTCGTTCGAAAACGTT 279260 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| | ||| || || | || || | | || || || ||| ||||| || ||| Sbjct 279261 AATCCAGACATCAACCCGCGTTTCTTCAAGTAGAAAATCGCACAAAACGACCCTGAGAAG 279320 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG-TC 4723 || || || || || || |||||||| || |||| | ||| | |||| || || Sbjct 279321 AAAATCCCCTCCACAGCTGCAAACGCCACCAATC--GCTCCGCA-AAGCT-ACTCTGCGA 279376 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 | ||||||| | ||||| | ||||| | ||||| ||||| | || || Sbjct 279377 TCCAATCCATCGAATCGCCCATTCCGCTTTGCGAGTCACGCAAGGAATCTCCTCGATCGC 279436 Query 4784 GTTAAATAATTTACTTTTTTCA-AATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 | || | | || ||| || | |||| ||||| || || | || || || Sbjct 279437 TCTGAAAAGCCGATCCTTCTCAGTATTGTCCTTG-ATATACGTATCCAACAGCAGCGAAT 279495 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 || |||| || || | ||| || || || ||| || | || || ||||| || || | Sbjct 279496 ACGTTTCCGAGTGCACATTCTCCATCGCCGCCTGGAACGCATAGAAACATCTGGCCTCCG 279555 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | || || |||||||||||||| ||||| |||||||| ||| || || || | Sbjct 279556 GCAACTGTACGTCGTTACAAAATCTCTCTACCAAGTTTTCCAGTACAATTCCATCCGACG 279615 Query 4963 CTGCAAAAAACGCCAAAAC 4981 | ||||| || ||||| || Sbjct 279616 CCGCAAAGAAGGCCAACAC 279634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427043755158959