Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq708 152 4e-32 seq191 147 2e-30 >seq708 Length=363590 Score = 152 bits (168), Expect = 4e-32 Identities = 413/628 (66%), Gaps = 3/628 (0%) Strand=Plus/Minus Query 27098 TCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGAT 27157 |||| || ||||| | || |||| ||||| | || ||| || | || | ||||| Sbjct 200972 TCAGCGTTGGAAACGCTCGAGGCTGTCTCTCAATTTGCTCCTTGAGTGCCTCAATGTGAT 200913 Query 27158 CCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGA 27217 ||| || || | ||| |||| |||||||| ||||| |||| ||||| || | Sbjct 200912 TGTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGTTTGAGCCCTGTCA 200853 Query 27218 CGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCC 27277 | | || || | | || || || || || || || || || |||||||| || | Sbjct 200852 CCTTGGCGATTAGACATGTTAGCAGCGAATAAGATGCTATATTGAACGGTACCCCAAGTC 200793 Query 27278 CCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACT 27337 ||||||| | || | ||||| | ||||| || ||||| || | || || |||| Sbjct 200792 CCATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCGACATAGAACT 200733 Query 27338 GACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGC 27397 | || ||||||||| ||||| ||||| | | | | |||||||| || Sbjct 200732 GGGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACACGGGTTCCAAGCTG 200673 Query 27398 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 27457 | | ||| || |||||||| | |||||| || || || | | | || || Sbjct 200672 AAATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTTAATCACATCAGTCAACT 200613 Query 27458 GATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 27517 ||||| |||| ||| |||||| | | ||| || ||||| || || || || | Sbjct 200612 GATCCTTCCCCGCCCCTCTGTAGTCGCCATCCTTGTTTGTATACTCCGCGCCAAAGTGTC 200553 Query 27518 TCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 27577 |||||| || || ||||| || || |||||||||||||||| | || || |||| Sbjct 200552 GCCATTGAAATCCATACACAGGACCAAGGTCTCCCTCTTCCC-GATCTGTAAACCCCGAG 200494 Query 27578 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 27637 |||||||||| | | || || || | ||||| || ||||||||||| | ||| Sbjct 200493 AGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCTGTCAGCA 200434 Query 27638 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 27697 ||||| | ||| || | | ||||| | ||||||||| | || || ||||| Sbjct 200433 GTTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAAC-ACCCGCCAAA 200375 Query 27698 AGACCCTCTTGGTCGTGAGGAG-GGGAA 27724 | || | |||||||||||| || ||||| Sbjct 200374 ACACTCGCTTGGTCGTGAGAAGCGGGAA 200347 >seq191 Length=259989 Score = 147 bits (162), Expect = 2e-30 Identities = 412/629 (66%), Gaps = 5/629 (1%) Strand=Plus/Plus Query 27099 CAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATC 27158 ||| || ||||| | || |||| ||||| | || ||| || | || | ||||| Sbjct 120558 CAGCGTTGGAAAAGCTCGAGGCTGTCTCTCAATTTGCTCCTTGAGTGCCTCAATGTGATT 120617 Query 27159 CAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGAC 27218 ||| || || | ||| |||| |||||||| ||||| || | ||||| || || Sbjct 120618 GTTGTACACATGTGTGTCCCCCAACACATGGACAAAGTCTCCGGGGTTGAGCCCTGTCAC 120677 Query 27219 GTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCC 27278 | || || | | || || || || || || || || || |||||||| || || Sbjct 120678 CTTGGCGATTAGACATGTTAGCAGGGAATAAGATGCTATATTGAACGGTACCCCAAGTCC 120737 Query 27279 CATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTG 27338 |||||| | || | ||||| | ||||| || ||||| || | || || ||||| Sbjct 120738 CATGTCGCAGGAGCGTTGGTACATTTGACATGATAGCTCGCCGTTTGCGACATAGAACTG 120797 Query 27339 ACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 27398 || ||||||||| ||||| ||||| | | | | |||||||| || | Sbjct 120798 GGCTAGAAGGTGGCACGGTGGAAGTGCCATCTTGTCAGTGGCACACGGGTTCCAAGCTGA 120857 Query 27399 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 27458 | ||| || |||||||| | |||||| || || ||| | | | || ||| Sbjct 120858 AATGATCATTCGCCTGTCGTTTGGGTTATTAACAATTGTGTCAATTACATCAGTCAACTG 120917 Query 27459 ATCCACCCCCATCCCCGAGTAGTCT--ACCCTCATGTCCGTGTACTCTGCTCCGAAATGC 27516 |||| |||| ||| |||||| | ||| ||| || ||||| || || || || Sbjct 120918 ATCCTTCCCCGCCCCTCTGTAGTCGCAATCCT--TGTTTGTATACTCCGCGCCAAAGTGT 120975 Query 27517 CTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTC 27576 | |||||| || || ||||| || || |||||||||||||||| | || |||| Sbjct 120976 CGCCATTGAAATCCATACACGGGACCAAGGTCTCCCTCTTCCCGATCTGTAAACCCCCGA 121035 Query 27577 TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGC 27636 |||||||||| | | || || || | ||||| || ||||||||||| | ||| Sbjct 121036 GAGTCCAAAAAGCTTTTTGATCCATTTCCTTCCCAAATTCGGACCCCCTTCTCTGTCAGC 121095 Query 27637 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 27696 ||||| | ||| || | | ||||| | ||||||||| | || || |||| Sbjct 121096 AATTTGGCATCAGTGCTTCCCTTAATAAACCAAAAAAGCTCCTCCGCAACACCCCGCCAA 121155 Query 27697 AAGACCCTCTTGGTCGTGAGGAG-GGGAA 27724 || || | |||||||||||| || ||||| Sbjct 121156 AACACTCGCTTGGTCGTGAGAAGCGGGAA 121184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369502142716613