Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq864 226 4e-54 seq932 214 2e-50 >seq864 Length=1598700 Score = 226 bits (250), Expect = 4e-54 Identities = 625/967 (65%), Gaps = 0/967 (0%) Strand=Plus/Plus Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 |||||| |||| | || || || || | || || || || ||||||| | || Sbjct 469112 AACAAATTTGTTGAGTGCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGT 469171 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 |||| || ||||| ||||| | ||| || || || || || || || ||||| Sbjct 469172 GTATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTT 469231 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 |||||| | || || || |||||||| || || | || || ||||| |||||||| | Sbjct 469232 GCTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGC 469291 Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902 || | ||||| | ||| || | || | ||| | | | ||||| | | | Sbjct 469292 CTCCAAAATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGTTT 469351 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 || |||| | || ||| |||||||| | || |||||||| ||| || || Sbjct 469352 CTCGTATTTCATGTANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGTGC 469411 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| || || | | ||||| | ||| ||||| || | ||||||||| | ||| Sbjct 469412 CTCATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATC 469471 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || ||||| || || || ||||| | | | || ||||| || || |||||| Sbjct 469472 NGGAATCCAGAGNCCATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTT 469531 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | || || || || | ||| || | |||||| || || | || ||||| | | Sbjct 469532 CCNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGC 469591 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 || || || || |||||||| | ||| |||||||||| ||| || || || | Sbjct 469592 GCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNAG 469651 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262 ||| || | ||| || || || || ||||| || || |||||| | | | | | Sbjct 469652 CATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCT 469711 Query 78263 AATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTT 78322 || || | || | || || || || || ||| || || | || || || || Sbjct 469712 GATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACANCGNTT 469771 Query 78323 CAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGA 78382 || || ||||| || || || ||| ||||| |||| | || | ||| || || || Sbjct 469772 CANNGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACTNGA 469831 Query 78383 CATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTT 78442 || ||| || || || || ||||| || || || || || ||||| || || || Sbjct 469832 CAGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGNGANGCATGTGTGAAGAGCTT 469891 Query 78443 TTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTAC 78502 || || | ||| || | | | | || ||||| | ||||||| || || Sbjct 469892 NCGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAAC 469951 Query 78503 CGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAA 78562 || || | ||| | ||||||||| || | ||||| ||||||| | ||| ||| ||| Sbjct 469952 CGAAACCCTCATNAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAA 470011 Query 78563 GTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAAT 78622 ||| || |||||||||| ||||| || ||||| | ||| |||||||| | |||||||| Sbjct 470012 GTAGGACCTTTCCAAAGTCTTAAANCCNAAATAATCGTACGAAAAGTCACGATCGTAAAT 470071 Query 78623 AATAACA 78629 ||| || Sbjct 470072 GATAGCA 470078 >seq932 Length=795108 Score = 214 bits (236), Expect = 2e-50 Identities = 630/967 (65%), Gaps = 3/967 (0%) Strand=Plus/Minus Query 77663 AACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGC 77722 |||||| |||| | || || || || | ||| || || || ||||||| | || Sbjct 206637 AACAAATTTGTTGAGTGCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGT 206578 Query 77723 ATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTT 77782 |||| || ||||| ||||| | ||| || || || || || || || ||||| Sbjct 206577 GTATTCAATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTT 206518 Query 77783 GCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGA 77842 |||||| | || || || |||||||| || || | || || ||||| |||||||| | Sbjct 206517 GCTCTTCCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGC 206458 Query 77843 TTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGCCTCTCTCT 77902 || | ||||| | ||| || || || | ||| | | | ||||| | | | Sbjct 206457 CTCCAAAATAGCGTACCAAACCTTTCGCGCATCAATCTTTGCCCTTGCTCGCCCTTGTTT 206398 Query 77903 TTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCA 77962 || |||| | || ||| |||||||| || || |||||||| ||| || || Sbjct 206397 CTCGTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGGTGC 206338 Query 77963 TTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATC 78022 ||||| || || | | ||||| | ||| ||||| || | ||||||||| | ||| Sbjct 206337 CTCATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATC 206278 Query 78023 AGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT 78082 || ||||| || || || ||||| | | | || || || || || |||||| Sbjct 206277 TGGAATCCAGAGTCCATAGAAGAGATCCCTTGCACGCTGCTC-TCCTTGCCATGATTCTT 206219 Query 78083 TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAAC 78142 | || || || || | ||| || | |||||| || || | || ||||| | | Sbjct 206218 CCGCAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGC 206159 Query 78143 TCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAA 78202 || || || || |||||||| | ||| |||||||||| ||| || || || | Sbjct 206158 GCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGAG 206099 Query 78203 CATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCG 78262 ||| || | ||| || || || || ||||| || || |||||| | | | | | Sbjct 206098 CATAGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCT 206039 Query 78263 AATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTT 78322 || || | || | || || || || || ||| || || | || |||||||| Sbjct 206038 GATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACAACGTTT 205979 Query 78323 CAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGA 78382 | | || ||||| || || || ||| ||||| |||| | || | ||| || || || Sbjct 205978 C-AGGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACT-GA 205921 Query 78383 CATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTT 78442 || ||| || || || || ||||| || || || || || ||||| || || || Sbjct 205920 CAGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGTGAAGCATGTGTGAAGAGCTT 205861 Query 78443 TTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTAC 78502 || || | ||| || | | | | || ||||| | ||||||| || || Sbjct 205860 GCGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAAC 205801 Query 78503 CGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAA 78562 || || | ||| | ||||||||| || | ||||| ||||||| | ||| ||| ||| Sbjct 205800 CGAAACCCTCATAAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAA 205741 Query 78563 GTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAAT 78622 ||| || |||||||||| ||||| |||||||| | ||| |||||||| | |||||||| Sbjct 205740 GTAGGACCTTTCCAAAGTCTTAAACCCAAAATAATCGTACGAAAAGTCACGATCGTAAAT 205681 Query 78623 AATAACA 78629 ||| || Sbjct 205680 GATAGCA 205674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694659048586720