Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq864 260 2e-64 seq932 250 4e-61 >seq864 Length=1598700 Score = 260 bits (288), Expect = 2e-64 Identities = 630/963 (65%), Gaps = 0/963 (0%) Strand=Plus/Plus Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 ||||| | || || || || || || | || || ||||| ||||||| | || Sbjct 469113 ACAAATTTGTTGAGTGCAATGGAGGCCAANTTGCACACGGCAACCTCATCGGGTGAGGTG 469172 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 |||| || ||||| || || | ||| || || || || || || || |||||| Sbjct 469173 TATTCAATAATCTCAGTACACAAATTNGAGCAACGAATGGTACCGAGGTTCTGCTGGTTG 469232 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 ||||| ||||||| || |||||||| || | | || ||||| || |||||||| | Sbjct 469233 CTCTTCCTGTTACAGGAATCCTTATANAGCATGTATGGGGTTCCGGTCTCAATCTGCGCC 469292 Query 76439 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT 76498 || | ||||| | ||| || | || | || | | | |||| | | | Sbjct 469293 TCCAAAATAGCGTACCAAACCTTNCGCGCNTCAATCTTNGCCCTTGCTCGCCCTTGTTTC 469352 Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 || |||| | || | | |||||||| | || |||||||| ||| ||| || Sbjct 469353 TCGTATTTCATGTANAGCTCCTCAAATTCGNCACCATAAACATCAGCCAGACCGGGTGCC 469412 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||||||||| | | ||||| | ||| ||||| |||| ||||||||| | ||| Sbjct 469413 TCATTCGGACAGAAGAGGGACCATGAANCATTTTCCTCNACCCTTTTCATAAACAAATCN 469472 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTT 76678 || ||||| || || || ||||| | | | | ||||| || || |||||| Sbjct 469473 GGAATCCAGAGNCCATAGAAGAGATCCCTTGCACGCTGCTCTTCCTTGCCATGATTCTTC 469532 Query 76679 TTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACA 76738 | ||||| || || | ||| || | |||||| || || | || || || | | Sbjct 469533 CNCAAGTCTAGNAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGGCG 469592 Query 76739 CCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAAC 76798 ||| || || || |||||||| | ||| ||||| |||| ||| || || || | | Sbjct 469593 CCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTNAGC 469652 Query 76799 ATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGA 76858 || || | ||| || || || |||||||| || || |||||| | | | | Sbjct 469653 ATNGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCCTG 469712 Query 76859 ATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTC 76918 || || | | ||||| || || || || || || || | ||||| || ||| Sbjct 469713 ATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACANCGNTTC 469772 Query 76919 AATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGAC 76978 | ||||| || ||||| || ||| |||||| |||| | || | ||| || || ||| Sbjct 469773 ANNGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACTNGAC 469832 Query 76979 ATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTT 77038 | ||| || || || || ||||| ||||| ||||| || ||||| ||||| || Sbjct 469833 AGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGNGANGCATGTGTGAAGAGCTTN 469892 Query 77039 TCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACA 77098 || || | ||| || | | || || || || || | ||||||| || || Sbjct 469893 CGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAACC 469952 Query 77099 GCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAG 77158 | || | ||| | ||||||||| || || || ||| ||||||| | ||| ||| |||| Sbjct 469953 GAAACCCTCATNAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCAAG 470012 Query 77159 TATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATA 77218 || || |||||||||| ||||| || ||||| | ||| |||||||| | |||||||| Sbjct 470013 TAGGACCTTTCCAAAGTCTTAAANCCNAAATAATCGTACGAAAAGTCACGATCGTAAATG 470072 Query 77219 ATA 77221 ||| Sbjct 470073 ATA 470075 >seq932 Length=795108 Score = 250 bits (276), Expect = 4e-61 Identities = 638/965 (66%), Gaps = 7/965 (1%) Strand=Plus/Minus Query 76259 ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCA 76318 ||||| | || || || || || || | ||| || ||||| ||||||| | || Sbjct 206636 ACAAATTTGTTGAGTGCAATGGAGGCCAAATTGCACACGGCAACCTCATCGGGTGAGGTG 206577 Query 76319 TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTG 76378 |||| || ||||| || || | ||| || || || || || || || |||||| Sbjct 206576 TATTCAATAATCTCAGTACACAAATTTGAGCAACGAATGGTACCGAGGTTCTGCTGGTTG 206517 Query 76379 CTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGAT 76438 ||||| ||||||| || |||||||| || | | || ||||| || |||||||| | Sbjct 206516 CTCTTCCTGTTACAGGAATCCTTATAGAGCATGTATGGGGTTCCGGTCTCAATCTGCGCC 206457 Query 76439 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTTCTCTCTT 76498 || | ||||| | ||| || || || | || | | | |||| | | | Sbjct 206456 TCCAAAATAGCGTACCAAACCTTTCGCGCATCAATCTTTGCCCTTGCTCGCCCTTGTTTC 206397 Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 || |||| | || | | |||||||| || || |||||||| ||| ||| || Sbjct 206396 TCGTATTTCATGTAGAGCTCCTCAAATTCGTCACCATAAACATCAGCCAGACCGGGTGCC 206337 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||||||||| | | ||||| | ||| ||||| |||| ||||||||| | ||| Sbjct 206336 TCATTCGGACAGAAGAGGGACCATGAAGCATTTTCCTCGACCCTTTTCATAAACAAATCT 206277 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACG-TTCT-TCATTTCCTGTATTCT 76676 || ||||| || || || ||||| | || ||| | || || || || ||||| Sbjct 206276 GGAATCCAGAGTCCATAGAAGAGATCCC---TTGCACGCTGCTCTCCTTGCCATGATTCT 206220 Query 76677 TTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 | | |||||||| || | ||| || | |||||| || || | || || || | Sbjct 206219 TCCGCAAGTCTAGGAAATCGAGAATGTCTGCATGCCAGGGCTCCAAGTAGATTGCAAAGG 206160 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCA 76796 | ||| || || || |||||||| | ||| ||||| |||| ||| || || || | Sbjct 206159 CGCCCTTACGCTTCCCGCCGCCCTGATCAACATACCTGGCGGTGTCATTGTACACCCTGA 206100 Query 76797 ACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCAC 76856 ||| || | ||| || || || |||||||| || || |||||| | | | | Sbjct 206099 GCATAGGGACAATTCCATTGGAAGTACCATTGGTGCCTCGAATATAGGACCGAGTGCCCC 206040 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 || || | | ||||| || || || || || || || | ||||| |||| Sbjct 206039 TGATGTTGTGGACGGCGAGGCCGATACCGCCGGCAGACTTTGAAATGACGGCACAACGTT 205980 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 || | ||||| || ||||| || ||| |||||| |||| | || | ||| || || | Sbjct 205979 TC-AGGTGTCGTAAATGCCTTCGATAGAATCATCAGTCATAGTGAGTAAAAAGCAACT-G 205922 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 ||| ||| || || || || ||||| ||||| ||||| || ||||| ||||| | Sbjct 205921 ACAGCTGAGGACGACAGGTACCCGCATTGAACAAAGTAGGTGAAGCATGTGTGAAGAGCT 205862 Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 | || || | ||| || | | || || || || || | ||||||| || | Sbjct 205861 TGCGTGAGAGAGCGTCGTAGGTGTTGAGAATGGCCTCCATGTCACCGAGATGAATGCCAA 205802 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 | | || | ||| | ||||||||| || || || ||| ||||||| | ||| ||| || Sbjct 205801 CCGAAACCCTCATAAGCATATGCTGCGGACGCTCAACAATCTTATTGTCAATTCTCAGCA 205742 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216 |||| || |||||||||| ||||| |||||||| | ||| |||||||| | ||||||| Sbjct 205741 AGTAGGACCTTTCCAAAGTCTTAAACCCAAAATAATCGTACGAAAAGTCACGATCGTAAA 205682 Query 77217 TAATA 77221 | ||| Sbjct 205681 TGATA 205677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712924392183360