Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_031127.1 Length=240761 Score E Sequences producing significant alignments: (Bits) Value seq263 152 8e-32 seq1105 89.7 8e-13 seq381 89.7 8e-13 seq360 89.7 8e-13 seq347 89.7 8e-13 seq331 89.7 8e-13 seq268 89.7 8e-13 seq262 89.7 8e-13 seq249 89.7 8e-13 seq239 89.7 8e-13 >seq263 Length=70425 Score = 152 bits (168), Expect = 8e-32 Identities = 156/201 (78%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 196110 CAGATGCGTTTTGACCT-GCGCAAAGGGTTCCCGCTGGTCACCACCAAAAAGTTGCACCT 196168 |||||||| ||||| || ||| || ||||||||| | || |||||||| ||||||| Sbjct 35491 CAGATGCGCTTTGATCTTGCGAGCAGT-TTCCCGCTGCTGACGACCAAAAAACTGCACCT 35549 Query 196169 GCGATCTATCATCCACGAACTGTTGTGGTTCCTGAACGGCGACACCAACATCCAGTATCT 196228 | | || || |||||||| | ||||| |||| |||||||| || || ||||| Sbjct 35550 GAAAAGCATTATTTACGAACTGCTCTGGTTTTTGAAGGGCGACACGAATATTGCCTATCT 35609 Query 196229 GAAAGACAACAACGTCAGTATCTGGGATGAGTGGGCAGATGAAGATGGCGATCTTGGCCC 196288 |||||| ||| ||| ||||||||||||||||| |||||| |||||||||||||||| Sbjct 35610 GAAAGAAAACGGCGTTTCGATCTGGGATGAGTGGGCTGATGAAAATGGCGATCTTGGCCC 35669 Query 196289 CGTCTACGGTAAGCAGTGGCG 196309 ||||| || ||||| ||||| Sbjct 35670 GGTCTATGGCAAGCAATGGCG 35690 >seq1105 Length=37519 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 35379 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 35438 Query 4653 AGAT 4656 | || Sbjct 35439 ATAT 35442 >seq381 Length=26942 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1043 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 984 Query 4653 AGAT 4656 | || Sbjct 983 ATAT 980 >seq360 Length=28839 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 3895 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 3954 Query 4653 AGAT 4656 | || Sbjct 3955 ATAT 3958 >seq347 Length=42671 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 35350 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 35291 Query 4653 AGAT 4656 | || Sbjct 35290 ATAT 35287 >seq331 Length=49663 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 16670 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 16611 Query 4653 AGAT 4656 | || Sbjct 16610 ATAT 16607 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 22493 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 22552 Query 4653 AGAT 4656 | || Sbjct 22553 ATAT 22556 >seq268 Length=42779 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 42202 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 42261 Query 4653 AGAT 4656 | || Sbjct 42262 ATAT 42265 >seq262 Length=94814 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 46182 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 46241 Query 4653 AGAT 4656 | || Sbjct 46242 ATAT 46245 >seq249 Length=73938 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 15135 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 15076 Query 4653 AGAT 4656 | || Sbjct 15075 ATAT 15072 >seq239 Length=192504 Score = 89.7 bits (98), Expect = 8e-13 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 4594 TTAGCTCAGTTGGT-AGAGCGCACCCCTGATAAGGGTGAGGCCACTGGTTCAAGTCCAGT 4652 ||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 96044 TTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCACTGGTTCAAATCCAGT 96103 Query 4653 AGAT 4656 | || Sbjct 96104 ATAT 96107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 770296386812680