Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Kappaphycus_20alvarezii_20[genbank_20GCA_5F002205965.1_202017-06-23] 1,123 sequences; 349,495,466 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq492 136 1e-26 seq557 132 1e-25 >seq492 Length=1085467 Score = 136 bits (150), Expect = 1e-26 Identities = 126/157 (80%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||| ||||| |||||||| || ||| ||| Sbjct 148277 CAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCGGAC 148218 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||||||||| || ||| || |||||||| ||||| ||||| ||||||||||| Sbjct 148217 ACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCA 148159 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 || ||||||||||| || || ||||| || || ||| Sbjct 148158 GCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGA 148122 Score = 136 bits (150), Expect = 1e-26 Identities = 126/157 (80%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||| ||||| |||||||| || ||| ||| Sbjct 148505 CAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCGGAC 148446 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||||||||| || ||| || |||||||| ||||| ||||| ||||||||||| Sbjct 148445 ACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCA 148387 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 || ||||||||||| || || ||||| || || ||| Sbjct 148386 GCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGA 148350 Score = 136 bits (150), Expect = 1e-26 Identities = 126/157 (80%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||| ||||| |||||||| || ||| ||| Sbjct 148733 CAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCGGAC 148674 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||||||||| || ||| || |||||||| ||||| ||||| ||||||||||| Sbjct 148673 ACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCCCCCCGGACCAGCA 148615 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGA 178079 || ||||||||||| || || ||||| || || ||| Sbjct 148614 GCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGA 148578 Score = 132 bits (146), Expect = 1e-25 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || ||||||||||| || || || || || || || Sbjct 147821 CAGATTTTTGTGAAGACATTGACTGGAAAAACGATTACGCTTGAAGTTGAGTCATCGGAT 147762 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || ||||| |||||||| || ||||| ||||| |||||||| Sbjct 147761 ACCATTGAGAACGTGAAGACTAAGATCCAGGACAAGGAGGGAATTCCTCCCGACCAGCAG 147702 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || |||||||| || || ||||| || || ||| | || |||| || || ||| | Sbjct 147701 CGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGGACGTAC-CTTGAGTGACTACAACAT 147643 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||||| || ||| ||||||| || Sbjct 147642 CCAGAAAGAGTCTACATTGCATCTGGT 147616 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| ||| | |||||||| ||||| || || || || || ||| ||| Sbjct 148049 CAGATTTTTGTGAAGACTTTGACAGGAAAGACGATTACGCTTGAAGTTGAGTCCTCGGAC 147990 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||||||||| || || || ||||| || ||||| Sbjct 147989 ACAATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCCGATCAGCAG 147930 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| || || ||||| || || ||| | ||| | || || ||| | Sbjct 147929 CGTCTGATTTTCGCTGGGAAGCAGCTTGAGGACGGACGTACTTTGAGTGACTACAACATT 147870 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||| || ||| ||||||| || ||| Sbjct 147869 CAGAAAGAGTCTACATTGCATCTGGTGTTG 147840 Score = 125 bits (138), Expect = 2e-23 Identities = 156/207 (75%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || ||||||||||| || || || || || || || Sbjct 147365 CAGATTTTTGTGAAGACATTGACTGGAAAAACGATTACGCTTGAAGTTGAGTCATCGGAT 147306 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||| || || || ||| ||||||||||| || ||||| ||||| |||||||| Sbjct 147305 ACGATAGAGAATGTGAAGACGAAA-ATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCA 147247 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACG 178101 || || || ||||| || || ||||| || ||||| | || |||| ||| || ||| Sbjct 147246 GCGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTAC-CTTGAGCGACTACAACA 147188 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || |||||||| |||| Sbjct 147187 TCCAGAAAGAGTCTACACTGCA-CTTG 147162 Score = 123 bits (136), Expect = 6e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||| || | || |||||||| || || || || || || || || Sbjct 147593 CAGATTTTTGTGAAGACATTGACTGGAAAAACTATAACGCTTGAAGTTGAGTCATCGGAT 147534 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||||||||| || ||||| ||||| |||||||| Sbjct 147533 ACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAGGGAATTCCTCCCGACCAGCAG 147474 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || || ||||| || || ||||| || ||||| | || |||| || || ||| | Sbjct 147473 CGTCTGATTTTCGCTGGCAAGCAGCTTGAGGATGGTCGTAC-CTTGAGTGACTACAACAT 147415 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || ||| ||||||| || Sbjct 147414 TCAGAAAGAGTCTACATTGCATCTGGT 147388 >seq557 Length=252103 Score = 132 bits (146), Expect = 1e-25 Identities = 158/207 (76%), Gaps = 7/207 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || ||||| || ||||| ||||| |||||||| || ||||||| Sbjct 154747 CAGATCTTTGTGAAGACCCTCACGGGCAAAACAATCACACTCGAGGTCGAGTCCTCAGAC 154806 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || ||||||||||| || ||| || |||||||| ||||| |||| || |||||||| Sbjct 154807 ACGATTGAGAACGTCAAGACCAAA-ATCCAGGACAAGGAAGGCATCC--CCCGACCAGCA 154863 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACG 178101 || ||||||||||| || || ||||| || || ||| | || |||| || || ||| Sbjct 154864 GCGTCTTATCTTCGCAGGCAAGCAGCTTGAGGACGGACGCAC-CTTGAGTGACTACAACA 154922 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 | || || || || || || || |||| Sbjct 154923 TTCAGAAGGAGTCCACCCTTCA-CTTG 154948 Score = 131 bits (144), Expect = 4e-25 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||| | || ||||| || || ||||| |||||||| ||| ||| Sbjct 154973 CAGATTTTCGTGAAAACTTTGACCGGAAAGACTATTACCCTTGAGGTGGAGTCCTCGGAC 155032 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || |||||||||||||| ||||| |||| ||||| ||||| Sbjct 155033 ACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCC--CCGGATCAGCAG 155090 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || || || | ||| | || || ||| | Sbjct 155091 CGCCTGATCTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAACATT 155150 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 155151 CAGAAGGAGTCCACCCTTCACCTGGT 155176 Score = 120 bits (132), Expect = 7e-22 Identities = 121/155 (78%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| ||| | || ||||| ||||| ||||| ||||| || ||| ||| Sbjct 155199 CAGATTTTCGTGAAGACTTTGACCGGAAAGACGATTACCCTTGAGGTTGAGTCCTC-GAC 155257 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||||||||| || || || |||||||| ||||| Sbjct 155258 ACTATCGAGAATGTTAAGACGAAGATTCAGGACAAGGAGGGTAT-CCTCCGGATCAGCAG 155316 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || |||||||| || || ||||| || || || Sbjct 155317 CGTCTCATCTTCGCTGGGAAGCAGCTTGAGGACGG 155351 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || ||||| || || || || || || || || || Sbjct 155426 CAGATTTTCGTGAAGACATTGACTGGAAAGACTATTACTCTTGAAGTTGAGTCATCGGAT 155485 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| |||||||| || || || ||||| || ||||| Sbjct 155486 ACGATTGAGAATGTGAAGACTAAGATCCAGGACAAGGAGGGTATTCCTCCCGATCAGCAG 155545 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || |||||||| || ||||| || || || | ||| | || || ||| | Sbjct 155546 CGTCTGATTTTCGCCGGCAAGCAGCTTGAGGACGGTCGTACTTTGAGTGACTACAACATT 155605 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || ||||| || || || || || || Sbjct 155606 CAGAAAGAGTCCACCCTTCACCTGGT 155631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203713880188862