Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq58 113 1e-19 >seq58 Length=166100 Score = 113 bits (124), Expect = 1e-19 Identities = 340/509 (67%), Gaps = 12/509 (2%) Strand=Plus/Minus Query 281577 TTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACCAAAATAC-TCGGGATAAT 281635 || || ||||| || ||||||||||| || |||||| || || || |||| || || Sbjct 92334 TTCGTTGACCATCCAGTTCCAATACCGTCTGCACCATTGAC-AAGGCACATCGGAATGAT 92276 Query 281636 AGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATACAAATACTTCAGAAGGTT 281695 || ||||| || || || || ||| ||||||||||| || ||||||||| | | Sbjct 92275 GGGAACATACCACTCAGGCTCGATTGGCATACCATCATCATCCAGATACTTCAGCAATCT 92216 Query 281696 ATCATCTGTATCGACGAAA-ACCTGTCGCGTCTTAGGGTTCAGTTTCGTGAAGATATACC 281754 || ||| | | ||||| | | ||| | || ||||| || ||||| || || | Sbjct 92215 GTCGTCT-TCTTCTCGAAAGATCAGTCTTGCAAGCGGATTCAGCTTTGTGAAAATGTAAC 92157 Query 281755 TTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACA 281814 ||| ||| ||||| ||||| ||| | | || || ||||| || |||| Sbjct 92156 GAGCAGACGCAGCATCTTTGCCACCTGACAGACGTGTACCGAATTGACCAGAAGG-AACA 92098 Query 281815 ACCAG-TTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGA 281873 | || || ||||| ||||| |||||| |||| | || ||||| || || || |||| Sbjct 92097 AGAAGATTGATGTTGTTGCTTCCGACGAAATCACGTGCAAGGTTAACAATCGTTGACTGA 92038 Query 281874 AGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCT 281933 || || |||||||| || || | ||| ||||| || ||| | ||| || Sbjct 92037 AGTGACTGTTCACCGTGATGGTATGATGATACTTCTGCAACGTATCCAGAAAGCTGGGCA 91978 Query 281934 ACCTTCACGTCTGATGTCAAG-TTGCGTTTGAAAGC-GCAATATAATACTTTTCGTTGAG 281991 || || | || | | ||| || || || ||||| | |||||| | |||||||| Sbjct 91977 ACTTTAATTTC-ATTCTTAAGATTACGCTT-AAAGCAGGCATATAAAATCTTTCGTTGTC 91920 Query 281992 AAGGCTTGAAACCATCAACGACAGACGGAAT-GCTGCGTTCCAGGTCATACCGCGAGAAC 282050 |||||| || |||||||| ||||| ||||| | | | || ||| || || ||| Sbjct 91919 CAGGCTTAAATCCATCAACAACAGATGGAATAGATCTCATACA-ATCAGCACGTGAAAAC 91861 Query 282051 AAAATAAGTTCCTTGTCAATGAAGTCGGG 282079 |||||||| |||| |||||| || || Sbjct 91860 TGGATAAGTTCTTTGTTAATGAAATCTGG 91832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057795605689850