Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq528 102 7e-17 seq216 96.9 3e-15 >seq15 Length=259596 Score = 109 bits (120), Expect = 5e-19 Identities = 153/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || |||||||| || || ||||| ||| || ||| || Sbjct 136239 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 136180 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | |||||||||||| ||||| ||||| | || |||||| Sbjct 136179 AGATACCATCGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCCAGATCA 136120 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||||||| || || |||||||| |||||| || | || | ||||| Sbjct 136119 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACAC--TTCAAGATTAT 136062 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||| |||||| |||| || ||| ||||| Sbjct 136061 AATATTCAAAAGGAAGCTACACTCCACTTGGTG 136029 >seq528 Length=44320 Score = 102 bits (112), Expect = 7e-17 Identities = 151/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || |||||||| || || ||||| ||| || ||| || Sbjct 9457 AATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAAAATGC 9398 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | |||||||| ||| ||||| ||||| | || |||||| Sbjct 9397 AGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCCAGATCA 9338 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||||||||||||||| || || |||||||| |||||| || | || | ||||| Sbjct 9337 ACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACAC--TTCAAGATTAT 9280 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 |||||||| |||||| |||| || ||| |||| Sbjct 9279 AATATTCAAAAGGAAGCTACACTCCACTTGGT 9248 >seq216 Length=89640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||| |||||||| || | || |||||||| || ||||| |||||| |||| ||| Sbjct 83500 AAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAA 83441 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 |||||| || | | | | |||||||||||| ||||| ||||| | || || Sbjct 83440 CGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGA 83381 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||||||||||| || || || |||||||| |||||| | |||| | || || Sbjct 83380 TCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTA 83321 Query 29138 CAATATTCAGAAGGAA 29153 ||| || || || ||| Sbjct 83320 CAACATCCAAAAAGAA 83305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428325063377225