Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq15 138 2e-27 seq528 134 2e-26 seq216 129 9e-25 >seq15 Length=259596 Score = 138 bits (152), Expect = 2e-27 Identities = 176/239 (74%), Gaps = 10/239 (4%) Strand=Plus/Minus Query 124537 CAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||||||| ||| | |||||| | || || || || || || | ||| | ||| | Sbjct 136240 CAATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAA---A 136184 Query 124597 ATG---ATACAATTTCTAATTTA--AAACAGAAAATTCAAGATAAAGAAGGTATACCACC 124651 ||| |||| || | ||| | || || |||||||| ||||| ||||| || || || Sbjct 136183 ATGCAGATACCAT--CGAATCTGTGAAGCAAAAAATTCAGGATAAGGAAGGAATTCCTCC 136126 Query 124652 TGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGA 124711 ||||||||||| ||||| || || ||||||||| | || ||| |||| ||| | |||| Sbjct 136125 AGATCAACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGTACACTTCAAGA 136066 Query 124712 TTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||||||||||||||| ||| | || | || ||||| | ||| | || |||||| ||| Sbjct 136065 TTATAATATTCAAAAGGAAGCTACACTCCACTTGGTGCTTCGTCTTCGTGGTGGTGTTA 136007 >seq528 Length=44320 Score = 134 bits (148), Expect = 2e-26 Identities = 175/239 (73%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || ||||||||| ||| | |||||| | || || || || || || | ||| | ||| Sbjct 9460 TATAATGCAAATCTTTGTGAAGACATTGACTGGAAAGACCATCACCCTTGAGGTCGAA-- 9403 Query 124595 AAATG-ATACAATTTCTAATTTA--AAACAGAAAATTCAAGATAAAGAAGGTATACCACC 124651 |||| | ||| | | ||| | || || || ||||| ||||| ||||| || || || Sbjct 9402 -AATGCAGACACTATTGAATCTGTGAAGCAAAAGATTCAGGATAAGGAAGGAATTCCTCC 9344 Query 124652 TGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGA 124711 ||||||||||| ||||| || || ||||||||| | || ||| |||| ||| | |||| Sbjct 9343 AGATCAACAAAGACTTATCTTCGCTGGAAAACAACTCGAAGATGGTCGCACACTTCAAGA 9284 Query 124712 TTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 ||||||||||||||| ||| | || | || ||||| | ||| | || |||||| ||| Sbjct 9283 TTATAATATTCAAAAGGAAGCTACACTCCACTTGGTCCTTCGTCTTCGTGGTGGTGTTA 9225 >seq216 Length=89640 Score = 129 bits (142), Expect = 9e-25 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA---GCA 124595 |||||||| ||| | |||||| | ||||| ||||| || || | || | ||| ||| Sbjct 83496 ATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAACGCA 83437 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || |||||| | | || || |||||||||||||| ||||| || || || ||| Sbjct 83436 ---GACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGAT 83380 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||||| |||||||| |||||||||||| | || ||| || |||| | | || || Sbjct 83379 CAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTAC 83320 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||||||| | || |||||| | || || | | || |||||||| Sbjct 83319 AACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACTTCGTGGTGGTAT 83267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755436216496000