Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq216 107 3e-18 seq528 95.1 2e-14 seq15 95.1 2e-14 >seq216 Length=89640 Score = 107 bits (118), Expect = 3e-18 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || || | ||| || || | |||||| || || || || Sbjct 83270 CCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGG 83329 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | ||||||||| || ||||| | |||||||||||||||||| Sbjct 83330 AGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGG 83389 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| |||||||| || |||| |||| ||| Sbjct 83390 ATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACT 83449 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 || || || |||||||| ||||| ||||| || | || |||||||| || Sbjct 83450 TCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 >seq528 Length=44320 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/232 (68%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | ||||| || | |||| ||| ||| || |||||||||||| Sbjct 9230 CCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGA-ATATTATAATCTTG 9288 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | |||||||||||| || || | |||||| ||||| ||||| Sbjct 9289 AAGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGG 9348 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| ||||| || ||| |||| | |||| || Sbjct 9349 AATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGAC 9408 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTA 146281 || || ||||| || || || || ||||| || | || ||||||||| || Sbjct 9409 CTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTATA 9460 >seq15 Length=259596 Score = 95.1 bits (104), Expect = 2e-14 Identities = 155/229 (68%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | ||| | | ||||| || | |||| ||| ||| || |||||||||||| Sbjct 136012 CCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGA-ATATTATAATCTTG 136070 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| || | | ||| || | |||||||||||| || || | |||||| ||||| ||||| Sbjct 136071 AAGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGG 136130 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||||||||| ||||| || ||||||| | |||| || Sbjct 136131 AATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGAC 136190 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || ||||| || || || || ||||| || | || ||||||||| Sbjct 136191 CTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATT 136239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743506928902400