Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq72 104 2e-17 seq126 82.4 7e-11 >seq72 Length=150145 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 8/126 (6%) Strand=Plus/Minus Query 58108 TAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAACGTATGG 58167 ||||||||||||| ||||||||||||| ||||||| | || |||||||| ||| ||| Sbjct 53680 TAATAGGAATAGATGAAGGACAATTTTATCCAGATTTAGTGGAATTTTGTGAA---ATG- 53625 Query 58168 CAAACGA----TGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATTTTTAAGAGAG 58223 ||| ||| ||||||||||||||| ||||| ||| | || || |||||| |||| | Sbjct 53624 CAAGCGAATTCTGGAAAAATTGTAATTGTTGCAGCTCTTGATGGAACATTTCAAAGAAAA 53565 Query 58224 CCATTT 58229 | |||| Sbjct 53564 CGATTT 53559 >seq126 Length=114318 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 58101 GCTGATGTAATAGGAATAGACGAAGGACAATTTTTTCCAGATATTGTAGAATTTTGCGAA 58160 || |||||||| ||| | || ||||||||||||| ||| ||| | | |||||||| ||| Sbjct 63369 GCAGATGTAATTGGAGTTGATGAAGGACAATTTTATCCTGATTTATTGGAATTTTGTGAA 63310 Query 58161 CGTATGGCAAACGATGGAAAAATTGTAATAGTTGCTGCTTTAGACGGTACATT 58213 | ||||| |||||||||||||| || || | ||| | ||||| || || Sbjct 63309 GCTCAAGCAAATGATGGAAAAATTGTTATTGTATCCGCTCTTGACGGAACTTT 63257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462499887967000