Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq216 125 6e-24 seq528 114 1e-20 seq15 114 1e-20 >seq216 Length=89640 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||||||| | || | || || || |||||| || || |||||||| | | Sbjct 83042 CCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGC 83101 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | |||| |||| |||| ||| ||||| ||||| || | | ||||||||| ||||| Sbjct 83102 AATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGA 83161 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| ||| || |||||||| | | | | |||| | || ||| Sbjct 83162 ATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACC 83221 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || || || || |||| ||| ||||||||||| ||||| Sbjct 83222 TCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | | ||| || || | |||| ||| || || || ||||||||||| | Sbjct 83270 CCACCACGAAGTCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGG 83329 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | | || || ||||||||||| ||||| || | | || || || ||||| Sbjct 83330 AGAGTTCTACCATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGG 83389 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||| || |||||||||||| || | | | |||| | || || Sbjct 83390 ATTCCTTCCTTATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACT 83449 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339 || | |||||| || || || |||| ||||||||||| ||||||||||| Sbjct 83450 TCGAGGGTAATTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 >seq528 Length=44320 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGT-GCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||||| || || ||| ||||| ||||| || || || | ||| |||| | || || Sbjct 9248 ACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTC 9306 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||||||||| ||||| || | | ||||| || ||||| | || ||||| ||| Sbjct 9307 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 9366 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| |||||||| || | | | |||| || || ||||| | ||| || ||||| Sbjct 9367 AATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTT 9426 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||||||||| Sbjct 9427 TCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 >seq15 Length=259596 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGT-GCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 |||||||| || || ||| ||||| ||||| || || || | ||| ||| | || || Sbjct 136030 ACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATCTTGAAGTGTACGACCATCTTC 136088 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||||||||||| ||||| || | | ||||| || ||||| | || ||||| ||| Sbjct 136089 GAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTG 136148 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||||||||| || | | | | | || || || ||||| | ||| || ||||| Sbjct 136149 AATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTT 136208 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||||||||| Sbjct 136209 TCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395065112618995