Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq216 96.9 3e-15 >seq216 Length=89640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||||||||||||||| || ||||| ||||||| ||||| || ||| |||| || ||| Sbjct 83500 AAACATGCAAATTTTTGTGAAGACATTGACAGGAAAAACAATTACCCTCGAAGTCGAAAA 83441 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 | |||| | ||| | || || || | ||| || |||||||| | || || || Sbjct 83440 CGCAGACACAATTGAATCTGTGAAGCAAAAAATTCAAGATAAGGAAGGAATCCCTCCGGA 83381 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||| | || || ||||| || ||||| | ||||| || ||| | || || Sbjct 83380 TCAGCAAAGACTTATTTTCGCAGGAAAACAACTCGAAGATGGTAGAACTCTCCAGGACTA 83321 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||||||| | || | ||||| || | ||||| | || |||| Sbjct 83320 CAACATCCAAAAAGAAGCCACATTGCATCTTGTGTTGAGACTTCGTGGTGGTA 83268 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||| |||| || ||||| |||||| | || |||||| | Sbjct 83268 ATGCAGATCTTTGTGAAAACTTTGACTGGAAAAACCATCACCCTTGAGGTTGAAAACGCT 83209 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || |||| || ||||||||||| | || || ||||| Sbjct 83208 GACACAATTGAGTCAGTTAAGCAGAAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAA 83149 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || || ||||||||| | || || || || || Sbjct 83148 CAGAGACTTATCTTCGCTGGAAAGCAATTGGAAGACGGTCGCACATTGCAAGACTACAAT 83089 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| || | || || ||||| || || ||| |||| || || Sbjct 83088 ATCCAAAAGGAGGCAACACTCCATCTTGTGCTGAGATTGAGAGGAGG 83042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445754726492400