Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq72 93.3 4e-14 >seq72 Length=150145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 275/415 (66%), Gaps = 18/415 (4%) Strand=Plus/Minus Query 55641 CATGTGGATTTATTCATCTTATATTAGGACCTATGTTCTCTGGAAAGAGTACAGAATTAA 55700 |||||||| ||| | | ||| | ||||| |||||| |||||||| ||| ||||| | Sbjct 53911 CATGTGGAAGCATTGAATTAATAATTGGACCAATGTTCAGTGGAAAGACTACTGAATTGA 53852 Query 55701 TTAGG----TTAGTAAACCGGTATCAAATAGCCACGTATAATTGTAGAGTTATAAAATAT 55756 | || || ||| || || |||| | ||||||| ||||| ||||| Sbjct 53851 TAAGACGAATTCGTA----GGCATTCCTTAGCAAAAAGAAATTGTATTGTTATCAAATAC 53796 Query 55757 TCTAAAGATAATAGATAT--GGAAATGATGCGGTATATACACACGATAAATGTTATATAT 55814 || || ||| |||||| |||| ||| | | || ||||| | | ||| |||| Sbjct 53795 TCAAAGGATCGCAGATATTCGGAA--GATAAACTTTGCACGCACGACCATT-TTACATAT 53739 Query 55815 C-GGCTGTATCTACGGATTC--CTTATTTGATATAAAAGATACACTAGATGATGTAGATA 55871 ||| | || | | ||| || | ||||| ||||| | | | |||| || | Sbjct 53738 GAGGCAATCTC-ATGTATTAAACTGAAA-GATATTGAAGATTTAGTGAAAGATGCCGAAA 53681 Query 55872 TTGTTGGAATAGACGAAGGACAATTCTTTAATGATATTGTAGAGTTTTGTGAATATATAG 55931 | | |||||||| ||||||||||| | | ||| | || || ||||||||| || Sbjct 53680 TAATAGGAATAGATGAAGGACAATTTTATCCAGATTTAGTGGAATTTTGTGAAATGCAAG 53621 Query 55932 CAAATAAAGGAAAAATTGTTATCGTTGCTGCATTAGATGGAACATATGAACGTAAACCAT 55991 | ||| ||||||||||| || ||||| || | |||||||||| | || | |||| || Sbjct 53620 CGAATTCTGGAAAAATTGTAATTGTTGCAGCTCTTGATGGAACATTTCAAAGAAAACGAT 53561 Query 55992 TTGGTAATATTCTTAATCTTATACCATTATCGGAAAAAGTTACTAAATTAAATGC 56046 || | || || || |||| || || |||| ||| |||| ||| | ||||| Sbjct 53560 TTAATGATGTTGTTGATCTAATTCCGTTATGCGAATCAGTTGAAAAACTCAATGC 53506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468512530506800