Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq216 100 3e-16 seq528 98.7 1e-15 seq15 95.1 1e-14 >seq216 Length=89640 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 143031 ||| || | ||| | ||| | ||||||||| |||||||| || | || || || Sbjct 83284 CAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTACCATC 83343 Query 143032 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 |||||||||||| || || | || || | ||||||||| ||||| || ||||| || || Sbjct 83344 TTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTTATC 83403 Query 143092 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGT 143151 ||||||||| || | ||| | ||||| | | ||| ||||| | || | || Sbjct 83404 TTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAATTGT 83463 Query 143152 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || |||||||| || || || |||||||| Sbjct 83464 TTTTCCTGTCAATGTCTTCACAAAAATTTGCAT 83496 >seq528 Length=44320 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || || | ||||| ||| ||||| || || ||||| Sbjct 9230 CCACCACGAAGACGAAGGACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGA 9289 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| |||||||||||||| ||||| |||| || | ||| ||||| ||||| Sbjct 9290 AGTGTGCGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGA 9349 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| ||||| || | ||| | ||||| | ||| || Sbjct 9350 ATTCCTTCCTTATCCTGAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACC 9409 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| || |||||||| || || || |||||||| Sbjct 9410 TCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 >seq15 Length=259596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || || || | ||||| ||| ||||| || || ||||| Sbjct 136012 CCACCACGAAGACGAAGCACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCTTGA 136071 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | |||||||||||||| ||||| |||| || | ||| ||||| ||||| Sbjct 136072 AGTGTACGACCATCTTCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGA 136131 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||||| || | ||| | || || | ||| || Sbjct 136132 ATTCCTTCCTTATCCTGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACC 136191 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGC 143187 |||| || | ||||| || |||||||| || || || |||||||| || Sbjct 136192 TCAAGGGTGATGGTCTTTCCAGTCAATGTCTTCACAAAGATTTGCATTGC 136241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507001122560400