Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq216 107 1e-18 seq15 98.7 7e-16 seq528 91.5 1e-13 >seq216 Length=89640 Score = 107 bits (118), Expect = 1e-18 Identities = 119/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | |||||||||||| || || | | |||||| ||| |||| | ||||| | Sbjct 83340 CATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCT 83399 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 ||||| ||||||||| || || ||| || ||||| || || |||| |||| Sbjct 83400 TATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAA 83459 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGT 44123 ||||||| || || || ||||||||||| |||||||||| Sbjct 83460 TTGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGT 83498 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 |||||||||||||| | ||| | ||| || || ||| ||||| ||||| || || | Sbjct 83042 CCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGATATTGTAGTCTTGC 83101 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 ||| || | || |||||||| ||||| || || || | | || |||||| |||| Sbjct 83102 AATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCCGGAGGA 83161 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 | |||||| || ||| ||| || || || || ||| || || || || || Sbjct 83162 ATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTCAGCGTTTTCAACC 83221 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || || ||||| |||||||| || ||||| Sbjct 83222 TCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 >seq15 Length=259596 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGT-GCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCG 43969 |||||| || || || ||| || ||||||||||||||||| || || || ||| |||| Sbjct 136029 CACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATC-TTGAAGTGTACGACCATCT 136086 Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029 || | ||||||||| || || || | | ||| || || |||| | ||||| ||||| Sbjct 136087 TCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCC 136146 Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089 ||||||||| || || | | |||||||| || || || | || || || Sbjct 136147 TGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTC 136206 Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || || || ||||||||||| |||||||| Sbjct 136207 TTTCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 >seq528 Length=44320 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGT-GCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCATCGT 43970 ||||| || || || ||| || ||||||||||||||||| || || || || |||| | Sbjct 9248 ACCAAGTGGAGTGTAGCT-TCCTTTTGAATATTATAATC-TTGAAGTGTGCGACCATCTT 9305 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | ||||||||| || || || | | ||| || || |||| | ||||| ||||| Sbjct 9306 CGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCT 9365 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||| ||||| || || ||| ||| ||||| || || || | || || || | Sbjct 9366 GAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCT 9425 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || ||||||||||| |||||||| Sbjct 9426 TTCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354768541530060