Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15 147 5e-30 seq528 143 6e-29 seq216 131 4e-25 >seq15 Length=259596 Score = 147 bits (162), Expect = 5e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||||| ||| || ||||||||||| || || || | ||| ||||| ||||||||||| Sbjct 136041 TGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTACGACCATCTTCGAGTTGTTTTCC 136100 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || || || |||||||| ||||| |||||||| ||||||||||| ||| || Sbjct 136101 AGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATTTTTTGCTT 136160 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||| ||| | |||||| | ||| ||||| || || || ||||| ||||| | ||| Sbjct 136161 CACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGT 136220 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 136221 CTTCACAAAGATTTGCATT 136239 >seq528 Length=44320 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||||| ||| || ||||||||||| || || || | ||| ||||| ||||||||||| Sbjct 9259 TGTAGCTTCCTTTTGAATATTATAATCTTGAAGTGTGCGACCATCTTCGAGTTGTTTTCC 9318 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTT 104481 ||| || || || || |||||||| ||||| |||||||| ||||||||||||||| || Sbjct 9319 AGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCTGAATCTTTTGCTT 9378 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 ||| ||| | || || | ||| ||||| || || || ||||| ||||| | ||| Sbjct 9379 CACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCTTTCCAGTCAATGT 9438 Query 104542 TTTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 9439 CTTCACAAAGATTTGCATT 9457 >seq216 Length=89640 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| ||||| | |||||| || || || ||||| ||||||||||| ||||| Sbjct 83288 ACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTACCATCTTCG 83347 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 ||||||||||| || ||||| || || || ||||| ||||| |||||||| ||||| ||| Sbjct 83348 AGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTTATCTTGA 83407 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 || ||| || ||| ||| | || || ||| || || || ||||| || || Sbjct 83408 ATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAATTGTTTTT 83467 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || | ||| || ||||| || ||||| || Sbjct 83468 CCTGTCAATGTCTTCACAAAAATTTGCATGTT 83499 Score = 84.2 bits (92), Expect = 5e-11 Identities = 147/221 (67%), Gaps = 11/221 (5%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| || || | |||||||||||| || ||||| || ||||| || || || Sbjct 82821 ACAAGATGCAAAGTGGCTTCTTTCTGAATGTTGTAGTCCTGGAGGGTTCTTCCATCCTCA 82880 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGAT-----------CAGGAGGTATTCCTT 104459 ||||| ||||||||||| || | ||||| || || | Sbjct 82881 AGTTGCTTTCCAGCAAAGATNNNNNNNNNNNNNNNNNNNNNNNNNCCGGAGGAATACCCT 82940 Query 104460 CTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTG 104519 |||||||||||||||| ||| ||| ||| | |||||| ||| || || || | Sbjct 82941 CTTTATCCTGAATCTTCTGTTTCACAGATTCAATGGTATCTGCGTTTTCGACTTCAAGGG 83000 Query 104520 TAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || ||||| | ||| || ||||| || |||||| Sbjct 83001 TAATTGTTTTTCCAGTCAATGTCTTCACAAAAATTTGCATT 83041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151367493948260