Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq15 138 1e-27 seq528 136 4e-27 seq216 136 4e-27 >seq15 Length=259596 Score = 138 bits (152), Expect = 1e-27 Identities = 160/212 (75%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCC 94855 ||||||||| | |||| ||||||||| | |||||||| | | ||||| || ||| Sbjct 136029 CACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCT-TGA-AGTGTACGACCATCT 136086 Query 94856 TCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCA 94915 || || |||||||| | ||||| | |||||| |||||||||||||| ||||| || || Sbjct 136087 TCGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCC 136146 Query 94916 TAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTT 94975 | ||||||| ||| || | ||| || || || | ||||| |||| |||||||| Sbjct 136147 TGAATTTTTTGCTTCACAGATTCGATGGTATCTGCATTTTCGACCTCAAGGGTGATGGTC 136206 Query 94976 TTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| | || ||||||||||| ||||| Sbjct 136207 TTTCCAGTCAATGTCTTCACAAAGATTTGCAT 136238 >seq528 Length=44320 Score = 136 bits (150), Expect = 4e-27 Identities = 159/211 (75%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 |||||||| | |||| ||||||||| | |||||||| | | ||||| || ||| | Sbjct 9248 ACCAAGTGGAGTGTAGCTTCCTTTTGAATATTATAATCT-TGA-AGTGTGCGACCATCTT 9305 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || |||||||| | ||||| | |||||| |||||||||||||| ||||| || || | Sbjct 9306 CGAGTTGTTTTCCAGCGAAGATAAGTCTTTGTTGATCTGGAGGAATTCCTTCCTTATCCT 9365 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 ||| ||| ||| || | | | |||||| || | ||||| |||| |||||||| | Sbjct 9366 GAATCTTTTGCTTCACAGATTCAATAGTGTCTGCATTTTCGACCTCAAGGGTGATGGTCT 9425 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| | || ||||||||||| ||||| Sbjct 9426 TTCCAGTCAATGTCTTCACAAAGATTTGCAT 9456 >seq216 Length=89640 Score = 136 bits (150), Expect = 4e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || |||||||||||||| || ||| | || | || | |||||||| | Sbjct 83029 AAAAATTTGCATTCCTCCTCTCAATCTCAGCACAAGATGGAGTGTTGCCTCCTTTTGGAT 83088 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 || || || || ||| || |||| || ||||| | ||||| | ||| || Sbjct 83089 ATTGTAGTCTTGCAATGTGCGACCGTCTTCCAATTGCTTTCCAGCGAAGATAAGTCTCTG 83148 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || |||||||||||||| ||||| | ||| || ||| || | | | ||||| Sbjct 83149 TTGGTCCGGAGGAATACCTTCCTTGTCTTGAATCTTCTGCTTAACTGACTCAATTGTGTC 83208 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || |||| ||||||||||||||||| | ||||||||||||||||||||| Sbjct 83209 AGCGTTTTCAACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTTTTCACAAAGATCTGCAT 83268 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | ||||| || | ||| ||||| | ||| || || | ||| | Sbjct 83281 TCTCAACACAAGATGCAATGTGGCTTCTTTTTGGATGTTGTAGTCCTGGAGAGTTCTACC 83340 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || |||||||| | || || | |||||||||||| ||||| || ||||| || Sbjct 83341 ATCTTCGAGTTGTTTTCCTGCGAAAATAAGTCTTTGCTGATCCGGAGGGATTCCTTCCTT 83400 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | ||||||| ||| || | | | ||||| |||| ||||| || | || || Sbjct 83401 ATCTTGAATTTTTTGCTTCACAGATTCAATTGTGTCTGCGTTTTCGACTTCGAGGGTAAT 83460 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||||||| || | || |||||||| || |||||| || Sbjct 83461 TGTTTTTCCTGTCAATGTCTTCACAAAAATTTGCATGTTT 83500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279460374200