Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Monocercomonoides_20sp._20PA203_20[genbank_20GCA_5F001643675.1_20201 6-05-13] 2,095 sequences; 74,721,868 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11 102 1e-17 seq876 100 4e-17 seq271 95.1 2e-15 seq785 86.0 1e-12 seq585 84.2 3e-12 seq62 84.2 3e-12 seq25 84.2 3e-12 >seq11 Length=282251 Score = 102 bits (112), Expect = 1e-17 Identities = 185/269 (69%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||||||||| ||||| | || Sbjct 48108 CTTCGCGATAACATCCAAGGAATTACAAAACCAGCCATCCGTCGTCTTGCTCGCAGAGGA 48049 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || | |||| | ||||||| || | | | ||||| || ||| Sbjct 48048 GGCGTGAAAAGAATCTCCAACCTTATCTATGATGAAACAAGAATCATCTTGAAAATGTTC 47989 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || | ||||||| | || || || || || | | | ||||| || Sbjct 47988 CTTGAAGGAATCATTCGTGATGCTGTGACTTACACAGAACATGCCAGAAGGAAGACAGTT 47929 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||||| ||||| || | ||||| ||||| | | ||||||| |||||| Sbjct 47928 ACCGCCATGGATATTGTCTACTCACTTAAACGCCAAGGAAGAACACTTTATGGATTTGGA 47869 Query 16694 AGTTAATCTTCTAATCAAA--CTTCGAAT 16720 |||||| |||| ||| ||||||| Sbjct 47868 GCATAATCT--TAATAAAAATTTTCGAAT 47842 >seq876 Length=25563 Score = 100 bits (110), Expect = 4e-17 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||||||||| || || | || Sbjct 24091 CTTCGCGATAACATCCAAGGAATTACAAAACCAGCCATCCGTCGTCTTGCCCGCAGAGGA 24032 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || | |||| | ||||||| || | | | ||||| || ||| Sbjct 24031 GGAGTGAAAAGAATCTCCAACCTTATCTATGATGAAACAAGAATCATCTTGAAAATGTTC 23972 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | |||| | ||||||| | || || || || |||| | | ||||| || Sbjct 23971 CTTGAAGGAATTATTCGTGATGCTGTGACATACACAGAACATGCTAGAAGGAAGACAGTT 23912 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||||| ||||| | | ||||| ||||| | | ||||||| |||||| Sbjct 23911 ACCGCCATGGATATTGTCTACTCTCTTAAACGCCAAGGAAGAACACTTTATGGCTTTGGA 23852 >seq271 Length=74664 Score = 95.1 bits (104), Expect = 2e-15 Identities = 165/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||| ||||| || || | || Sbjct 6080 CTTCGTGATAACATCCAAGGAATTACAAAACCAGCCATCCGCCGTCTTGCCCGCAGAGGA 6021 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| || | |||| | ||||||| || | | | | ||||| || ||| Sbjct 6020 GGAGTGAAAAGAATCTCCAACCTTATCTATGATGAAACAAGAATTATCTTGAAAATGTTC 5961 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || | |||||| | || ||||| || || | | | ||||| || Sbjct 5960 CTTGAAGGAATCATTCGCGATGCTGTGACATACACCGAACATGCCAGAAGAAAGACAGTT 5901 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| |||||||||| ||||| | | ||||| ||||| | | | ||||||| |||||| Sbjct 5900 ACCGCCATGGATATTGTCTACTCGCTTAAACGCCAAGGAAGAACGCTTTATGGATTTGGA 5841 >seq785 Length=30112 Score = 86.0 bits (94), Expect = 1e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||||||||| || || | || Sbjct 1508 CTTCGTGATAACATCCAAGGAATTACAAAACCAGCCATCCGTCGTCTTGCCCGCAGAGGA 1567 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || | |||| | ||||||| || | | | ||||| || ||| Sbjct 1568 GGCGTGAAAAGAATCTCCAACCTTATCTATGATGAAACAAGAATCATCTTGAAAATGTTC 1627 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || | ||||||| | || || || || || | | | ||||| || Sbjct 1628 CTTGAAGGAATCATTCGTGATGCTGTGACTTACACAGAACATGCCAGAAGGAAGACAGTT 1687 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| | |||||||| ||||| || | ||||| ||||| | | ||||||| |||||| Sbjct 1688 ACCGCTATGGATATTGTCTACTCACTTAAACGCCAAGGAAGAACACTTTATGGCTTTGGA 1747 >seq585 Length=40145 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||||||||| || || | || Sbjct 6930 CTTCGTGATAACATCCAAGGAATTACAAAACCAGCCATCCGTCGTCTTGCCCGCAGAGGA 6989 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || | |||| | ||||||| || | | | ||||| || ||| Sbjct 6990 GGCGTGAAAAGAATCTCCAACCTTATCTATGATGAAACAAGAATCATCTTGAAAATGTTC 7049 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || | ||||||| | || || || || || | | | ||||| || Sbjct 7050 CTTGAAGGAATCATTCGTGATGCTGTGACATACACTGAACATGCCAGAAGGAAGACAGTT 7109 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| | |||||||| ||||| || | ||||| ||||| | | ||||||| ||||| Sbjct 7110 ACCGCAATGGATATTGTCTACTCACTTAAACGCCAAGGAAGAACACTTTATGGATTTGG 7168 >seq62 Length=159107 Score = 84.2 bits (92), Expect = 3e-12 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||| ||||| || || | || Sbjct 17614 CTTCGTGATAACATCCAAGGAATTACAAAACCAGCCATCCGCCGTCTTGCCCGCAGAGGA 17673 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || | |||| | ||||||| || | | | ||||| || ||| Sbjct 17674 GGCGTGAAAAGAATCTCCAACCTTATCTATGATGAAACAAGAATCATCTTGAAAATGTTC 17733 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || | | || | ||||||| | || || || || || | | | ||||| || Sbjct 17734 CTTGAAGGAATCATTCGTGATGCTGTGACATACACAGAACATGCCAGAAGGAAGACAGTT 17793 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||||| ||||| || | ||||| ||||| | | ||||||| ||||| Sbjct 17794 ACCGCCATGGATATTGTCTACTCACTCAAACGCCAAGGAAGAACACTTTATGGCTTTGG 17852 >seq25 Length=225114 Score = 84.2 bits (92), Expect = 3e-12 Identities = 164/240 (68%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||||||||| || || ||||| ||||| ||||| || || | || Sbjct 9803 CTTCGTGATAACATCCAAGGAATTACAAAACCAGCAATCCGCCGTCTTGCACGCAGAGGA 9744 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGAT-GTTTTGAAGATCTT 16572 || || || | |||| | ||||||| || | | ||| | || || || || Sbjct 9743 GGCGTGAAAAGAATCTCAAACCTTATCTATGATGAAACAAG-GATCATCTTAAAAATGTT 9685 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| | | || | ||||||| | || || || || || | | | ||||| || Sbjct 9684 CCTTGAAGGAATCATTCGTGATGCTGTGACATACACAGAACATGCCAGAAGGAAGACAGT 9625 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 ||| |||||||||| ||||| || | ||||| ||||| | | ||||||| ||||| Sbjct 9624 TACCGCCATGGATATTGTCTACTCACTTAAACGCCAAGGAAGAACACTTTATGGCTTTGG 9565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073284526835